View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_high_37 (Length: 406)
Name: NF1125_high_37
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_37 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 1 - 377
Target Start/End: Complemental strand, 44460056 - 44459680
Alignment:
| Q |
1 |
cttctgacaaatatttggatataatttccagtggctcaacattctgtagaggggcatcatttgatccatctgctgccttagctacactgtacccattcca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44460056 |
cttctgacaaatatttggatataatttccagtggctcaacattctgtagaggggcatcatttgatccatctgctgccttagctacactgtacccattcca |
44459957 |
T |
|
| Q |
101 |
ccattcacctaaccattcatcaaacattgtattcttagtagccatggaccataagaacattaaaacatgttgttcttcctgtgttaaagatgccattagc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459956 |
ccattcacctaaccattcatcaaacattgtattcttagtagccatggaccataagaacattaaaacatgttgttcttcctgtgttaaagatgccattagc |
44459857 |
T |
|
| Q |
201 |
caaggtatcatatcttgtaatatttctgcacttattcttccaagtatgcatcctatgatcttcccttgctcccggttcgagaagaattctctaattatag |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459856 |
caaggtatcatatcttgtaatatttctgcacttattcttccaagtatgcaccctatgatcttcccttgctcccggttcgagaagaattctctaattatag |
44459757 |
T |
|
| Q |
301 |
gccaaatttctatttcctcgcggtttatatgatcagaaagtaacttatgcattgatttgcacctttcttgcagcttc |
377 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44459756 |
gccaaatttctatttcctcgcggtttatatgatcagaaagtaacttatgcattgatttgcacctttcttgcagcttc |
44459680 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University