View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_high_47 (Length: 336)
Name: NF1125_high_47
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_47 |
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Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 17339364 - 17339086
Alignment:
| Q |
18 |
ggtggaatgaccgtactaccattaagtagtaataactcattaattcaataagattgatgactcattaatttgtttctttagtggtggttggggttcactc |
117 |
Q |
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| T |
17339364 |
ggtggaatgaccgtactaccattaagtaataataactcattaattcaataagattgatgactcattagtttgtttctttagcggtggtcggatttcaccc |
17339265 |
T |
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| Q |
118 |
cataccttgtctatattatgcattgtttatactacctgagttaagcttatgaggatactcgttagtttattttgattttgtcggtaaggatttggttgat |
217 |
Q |
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| T |
17339264 |
aagaccttgcttatattatgtattgttcataccaactgagttaagcttacgaggatattcgtt--------ttgattttgtcggtaaggatttggttgat |
17339173 |
T |
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| Q |
218 |
ccaaaaagatcgtagaatacttttgctatttaagatattgtacccccattatgagatctatcaatgaaattgcaatcattcctttat |
304 |
Q |
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| T |
17339172 |
ccaaaaagatcgtagaatacttttgctatttaagatattgtacccccattatgagatctatcaatgaaattgcaatcattcctttat |
17339086 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 29335598 - 29335633
Alignment:
| Q |
129 |
tatattatgcattgtttatactacctgagttaagct |
164 |
Q |
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| T |
29335598 |
tatattatgcattgtttatactaactgagttaagct |
29335633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 34481437 - 34481480
Alignment:
| Q |
129 |
tatattatgcattgtttatactacctgagttaagcttatgagga |
172 |
Q |
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| T |
34481437 |
tatataatgcattgttcatactaactgagttaagcttatgagga |
34481480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 3847651 - 3847603
Alignment:
| Q |
121 |
accttgtctatattatgcattgtttatactacctgagttaagcttatga |
169 |
Q |
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| T |
3847651 |
accttgtatatattatgcattattttttctaactgagttaagcttatga |
3847603 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 47643958 - 47643999
Alignment:
| Q |
131 |
tattatgcattgtttatactacctgagttaagcttatgagga |
172 |
Q |
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| T |
47643958 |
tattatgcattgtctatactaactgagttaagcttacgagga |
47643999 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 34960180 - 34960216
Alignment:
| Q |
129 |
tatattatgcattgtttatactacctgagttaagctt |
165 |
Q |
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| T |
34960180 |
tatattatgcattgtttataccaactgagttaagctt |
34960216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8727729 - 8727769
Alignment:
| Q |
129 |
tatattatgcattgtttatactacctgagttaagcttatga |
169 |
Q |
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| T |
8727729 |
tatattatgcattgtttctactaactgagctaagcttatga |
8727769 |
T |
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