View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_high_52 (Length: 330)
Name: NF1125_high_52
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_52 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 12 - 301
Target Start/End: Original strand, 21433681 - 21433970
Alignment:
| Q |
12 |
atgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttctgacttgt |
111 |
Q |
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| T |
21433681 |
atgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttctgacttgt |
21433780 |
T |
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| Q |
112 |
tttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatgaacaatttcaaaatatacttctttttacctatacaaattgacaaatta |
211 |
Q |
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| T |
21433781 |
tttttctgaattatgtaattggaatggttagtgtagtggtagttaatctatgaacaatttcaaaatatacttctttttacctatacaaatggacaaatta |
21433880 |
T |
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| Q |
212 |
aacacagttgtataatatgaatcaaagaactctatagtcatatgaaatgcaaatgtaaaactgatttggtgccctatcattggaagtttg |
301 |
Q |
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| T |
21433881 |
aacacaattgtataatatgaatcaaagaactctatagtcatatgaaatgcaaatgtaaaactgatttggtgccctatcattggaagtttg |
21433970 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 12 - 255
Target Start/End: Original strand, 27152651 - 27152895
Alignment:
| Q |
12 |
atgaaggagaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaa-aggtgagtgcgctgctagtttctgacttg |
110 |
Q |
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| T |
27152651 |
atgaagcagaaggatctgaatgttgtgttggggacaaaaagtgtaataataattcttgatgataaaaaaaaaggtgagtgcactgctagtttctgattgg |
27152750 |
T |
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| Q |
111 |
ttttttctgaattatgtaattggaatggttagtgtagtgatagttaatctatga-----acaatttcaaaatatacttctttttacctatacaaattgac |
205 |
Q |
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| T |
27152751 |
ttttttctgaattatctaattggaatggt-----tcgtgatagttaatctatgaggatgaaaatctcaaaacatttttctttttacctatatgaattaac |
27152845 |
T |
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| Q |
206 |
aaattaaacacagttgtataatatgaatcaaagaactctatagtcatatg |
255 |
Q |
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| T |
27152846 |
aaactaaacacaattgtataatatgaatcaaagaacgctataatcatatg |
27152895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 20 - 136
Target Start/End: Complemental strand, 27075610 - 27075494
Alignment:
| Q |
20 |
gaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttctgacttgttttttctg |
119 |
Q |
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| T |
27075610 |
gaaggatctggatcttgtgttggggacagaaaattctatcttaattcttgatgataaagaagaggtgagtgcactgctagtttctgacttgtttttgcgg |
27075511 |
T |
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| Q |
120 |
aattatgtaattggaat |
136 |
Q |
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| T |
27075510 |
aattgtttaattagaat |
27075494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 27028509 - 27028592
Alignment:
| Q |
20 |
gaaggatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgcgctgctagtttc |
103 |
Q |
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| T |
27028509 |
gaaggatctggatcttgtgttggggacagaaaattctatcttaattcttgatgataaagaagaggtgagtgcactgctagtttc |
27028592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 26989694 - 26989761
Alignment:
| Q |
24 |
gatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgc |
91 |
Q |
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| T |
26989694 |
gatctggatcttgtgttggggacagaaaattctatcataattcttgatgacaaagaagaggtgagtgc |
26989761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 24 - 91
Target Start/End: Original strand, 34691769 - 34691836
Alignment:
| Q |
24 |
gatctgaatcttgtgttggggacagaaagttctatcctaattcttgatgataataaaaaggtgagtgc |
91 |
Q |
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| T |
34691769 |
gatctggatcttgtgttggggacagaaaattctatcgtaattcttgatgacaaagaagaggtgagtgc |
34691836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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