View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_high_54 (Length: 322)
Name: NF1125_high_54
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_54 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 310
Target Start/End: Original strand, 38724347 - 38724654
Alignment:
| Q |
7 |
aaaactgccttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggccttcattacttcaacaattgcactattaaaggctcag |
106 |
Q |
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| T |
38724347 |
aaaactgccttttacaattgcacattctctggtgttcaagacaccctatacgatcacaaaggccttcattacttcaacaattgcactattaaaggctcag |
38724446 |
T |
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| Q |
107 |
ttgatttcatttgtggtcatgggaaatccctctatgaggtaatctttccattcatgagttcaagttcaaatatgcacatttgaaaaacttatgaaatggg |
206 |
Q |
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| T |
38724447 |
ttgatttcatttgtggtcatgggaaatccctctatgaggtaatctttccattcatgagttcaagttcaaatatgcacatttgaaaaacttatgaaatggg |
38724546 |
T |
|
| Q |
207 |
cttttatggccaagtgggttgttaatgagttataatagaaagattttgataatattaataaaagtacagttttcatgtctgccactat----aatagctt |
302 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
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| T |
38724547 |
cttttatggccaagtgggttgttaatgagttataatagaaagattttgataatattaataaaagtacaattttcatgtctgccactatatacaatagctt |
38724646 |
T |
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| Q |
303 |
gttgccta |
310 |
Q |
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|||||||| |
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| T |
38724647 |
gttgccta |
38724654 |
T |
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