View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_high_56 (Length: 309)
Name: NF1125_high_56
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_56 |
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| [»] scaffold0361 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 9 - 281
Target Start/End: Complemental strand, 41570278 - 41570005
Alignment:
| Q |
9 |
agcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaacaa-taa |
107 |
Q |
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| T |
41570278 |
agcagagaggaacggattgttaattgattgatccaccatgttaaggacatggttcaagctcctagtagaagaaaacggatcgaacacatctaaaaaataa |
41570179 |
T |
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| Q |
108 |
aacaggaaagaaagataaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttacaa |
207 |
Q |
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| T |
41570178 |
aacaggaaagaaaaataaagttaagtatttgttaatcaaaatatagattgaaattgaatagttatatttttgttagggttagaatgaaacaattttacaa |
41570079 |
T |
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| Q |
208 |
gtgataacaagtaccagaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgt |
281 |
Q |
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| T |
41570078 |
gtgataacaagtaccagaaaaggaagggcgacaaacagcgtccatgatgttgctgtcatcgaagagttcatcgt |
41570005 |
T |
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Target: scaffold0361 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 101
Target Start/End: Original strand, 9101 - 9193
Alignment:
| Q |
9 |
agcagagaggaacggattgttaattgattgatccaccatgttaaagacatggttcaagctcctagtagaagaaaacggatcgaacacatctaa |
101 |
Q |
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|||||| ||||| ||||||| ||| |||||||||||||||||| || ||| |||| |||||||| | |||||||||||| ||||||||||| |
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| T |
9101 |
agcagaaaggaatggattgtccattaattgatccaccatgttaagcacctggctcaaactcctagttggagaaaacggatcaaacacatctaa |
9193 |
T |
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