View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_high_59 (Length: 300)
Name: NF1125_high_59
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_59 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 21433784 - 21433493
Alignment:
| Q |
1 |
aaaaacaagtcagaacctagcagcgccctcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctcct |
100 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433784 |
aaaaacaagtcagaaactagcagcgcactcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctcct |
21433685 |
T |
|
| Q |
101 |
tcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433684 |
tcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacc |
21433585 |
T |
|
| Q |
201 |
catggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccattctttgcctatgct |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21433584 |
catggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccattctttgcctatgct |
21433493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 26989743 - 26989507
Alignment:
| Q |
43 |
tcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttga |
142 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26989743 |
tcatcaagaattatgatagaattttctgtccccaacacaagatccagatctttcacgttcttttgagtcccatcatctcgagaaattaccttatctttga |
26989644 |
T |
|
| Q |
143 |
agaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttcttt |
242 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
26989643 |
agtattccccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttcttt |
26989544 |
T |
|
| Q |
243 |
aagaaatgtgcggacaaagggcctcaacttggccatt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
26989543 |
aagaaatgtgcggacaaagggcctcaacttggtcatt |
26989507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 279
Target Start/End: Original strand, 27075515 - 27075793
Alignment:
| Q |
1 |
aaaaacaagtcagaacctagcagcgccctcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctcct |
100 |
Q |
| |
|
||||||||||||||| ||||||| || ||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| | | |
|
|
| T |
27075515 |
aaaaacaagtcagaaactagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttcacat |
27075614 |
T |
|
| Q |
101 |
tcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacc |
200 |
Q |
| |
|
|| ||| ||||||||| ||||||||||| ||||||||||||||| ||| | ||||||||||||||||||| |||||||||||||| || |||||||||| |
|
|
| T |
27075615 |
tcttttgagtcccatcctctcgagaaattaccttatctttgaagtattcctcttgaggatcaagcagcctagccatctctaatgaatattgccgatcacc |
27075714 |
T |
|
| Q |
201 |
catggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccatt |
279 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27075715 |
catggtgtagatgtacatttcaaacatttcacttgcttgtttaagaaatgtgcggacaaagggcctcaacttggtcatt |
27075793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 27028588 - 27028326
Alignment:
| Q |
17 |
ctagcagcgccctcacctttttattatcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcccatc |
116 |
Q |
| |
|
||||||| || ||||||| || |||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| | ||| ||| ||||||||| |
|
|
| T |
27028588 |
ctagcagtgcactcacctcttctttatcatcaagaattaagatagaattttctgtccccaacacaagatccagatccttcacgttcttttgagtcccatc |
27028489 |
T |
|
| Q |
117 |
atctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtac |
216 |
Q |
| |
|
||||||||||| ||||||||||||||| | ||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
27028488 |
ctctcgagaaattaccttatctttgaagtagagcccttgaggatcaagcagcttggccatctctaacgagtaccgccgatcacccatggtgtagatgtac |
27028389 |
T |
|
| Q |
217 |
atttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccatt |
279 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
27028388 |
atttcaaacatttcacttgcttctttaagaaatgtgcggacaaagggcctcaacttggtcatt |
27028326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 285
Target Start/End: Complemental strand, 27152755 - 27152470
Alignment:
| Q |
1 |
aaaaacaagtcagaacctagcagcgccctcacctttttatt-atcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctcc |
99 |
Q |
| |
|
|||||| | |||||| ||||||| || ||||||||||| || |||||||||||||| || ||||| |||||||||||||| |||||||||||||| | |
|
|
| T |
27152755 |
aaaaaccaatcagaaactagcagtgcactcacctttttttttatcatcaagaattattattacactttttgtccccaacacaacattcagatccttctgc |
27152656 |
T |
|
| Q |
100 |
ttcatttcagtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcac |
199 |
Q |
| |
|
|||||||||||||||||||||| | |||||||||||||||||||| ||| | ||||||||||||||||| |||||||||||| ||| ||| ||||| || |
|
|
| T |
27152655 |
ttcatttcagtcccatcatctcaataaatcaccttatctttgaagtattccacttgaggatcaagcagcttggccatctctagtgaatactgccgaatac |
27152556 |
T |
|
| Q |
200 |
ccatggtgtagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaacttggccattctttgc |
285 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||| |
|
|
| T |
27152555 |
ccatggtgtagatgtacatttcaaacacttcacttgcttctttaagaaatgtacggacgaagggcctcaacttgttcattctttgc |
27152470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 181; Significance: 8e-98; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 181; E-Value: 8e-98
Query Start/End: Original strand, 43 - 279
Target Start/End: Complemental strand, 34691818 - 34691582
Alignment:
| Q |
43 |
tcatcaagaattaggatagaactttctgtccccaacacaagattcagatccttctccttcatttcagtcccatcatctcgagaaatcaccttatctttga |
142 |
Q |
| |
|
||||||||||||| ||||||| ||||||||||||||||||||| |||||| ||| | ||| ||| ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
34691818 |
tcatcaagaattacgatagaattttctgtccccaacacaagatccagatctttcacgttcttttgagtcccatcatctcgagaaattaccttatctttga |
34691719 |
T |
|
| Q |
143 |
agaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtgtagatgtacatttcaaacattttacttgcttcttt |
242 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
34691718 |
agtattccccttgaggatcaagcagcctggccatctctaatgagtactgccgatcacccatggtgtagatgtacatttcaaacatttcacttgcttcttt |
34691619 |
T |
|
| Q |
243 |
aagaaatgtgcggacaaagggcctcaacttggccatt |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
34691618 |
aagaaatgtgcggacaaagggcctcaacttggtcatt |
34691582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 108 - 272
Target Start/End: Original strand, 50172854 - 50173018
Alignment:
| Q |
108 |
agtcccatcatctcgagaaatcaccttatctttgaagaatttcccttgaggatcaagcagcctggccatctctaatgagtaccgccgatcacccatggtg |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||| ||| |||||||||||||||||| |||||||||| |||| || ||| ||||||||||||| |
|
|
| T |
50172854 |
agtcccatcatctcgagaaatcactttagaattgaagtattctccttgaggatcaagcagcttggccatctccaatgcatagggcctatcacccatggtg |
50172953 |
T |
|
| Q |
208 |
tagatgtacatttcaaacattttacttgcttctttaagaaatgtgcggacaaagggcctcaactt |
272 |
Q |
| |
|
||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
50172954 |
tagatgtacatctcaaacatttcacttgcttctttaagaaatgtacggacaaagggcctcaactt |
50173018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University