View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_high_8 (Length: 577)
Name: NF1125_high_8
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 11 - 549
Target Start/End: Complemental strand, 12149818 - 12149267
Alignment:
| Q |
11 |
cacagacacgaacattgtacacaattgttgtgggcaccggcatgtcccgg-------tgctatatagtttttagttaatgtgttgtgttttatattgcat |
103 |
Q |
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| T |
12149818 |
cacagacacgaacattggacacaattgttgtgggcaccggcatgtcccggaccccggtgctatatagtttttagttaatgtgttgtgttttgtattgcat |
12149719 |
T |
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| Q |
104 |
aggtgaaacaattgttagnnnnnnntgatgaagggcatgttgttgctacttgccgtaatcctgatgcatcaactgggctacttcgtttgaaggatagatt |
203 |
Q |
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| T |
12149718 |
aggtgaaacaattgttagaaaaaaatgatgaagggcatgttgttgctacttgccgtaatcctgatgcatcaactgggctacttcgtttgaaggatagatt |
12149619 |
T |
|
| Q |
204 |
tgatgatcgacttcaaattttgcctttggatttgactgttgaaagttctattgaggttatgcttcttttcccattcattgnnnnnnnnnnnnnnnnnnnn |
303 |
Q |
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| T |
12149618 |
tgatgatcgacttcaaattttgcctttggatttgactgttgaaagttctattgaggttatgcttcttttcccattcattatttttctttctttttcattt |
12149519 |
T |
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| Q |
304 |
nnacttacattacagtatgtgtgaatttagacaccaagttgagatttggtgacccttttagttacatgactagaatgtagatgctaaagttaatatggat |
403 |
Q |
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| T |
12149518 |
ttacttacattacagtatgtgtgaatttagacaccaagttgagatttggtgacccttttagttacaagactagaatgtagatgctaaagttaatatggat |
12149419 |
T |
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| Q |
404 |
aaggatagatatgagatttgtgacaaggtttaggaaatatgtttagctaatatttagctttaggtttaaatatgctat------ttgtgaatatgtctcc |
497 |
Q |
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| T |
12149418 |
aaggatagatatgagatttgtaacaaggtttaggaaatatgtttagctaatatttagctttaggtttaaatatgctattagtacttgtgaatatgtctcc |
12149319 |
T |
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| Q |
498 |
ttctatgtggttagactcaattggttaatgagcttcagaacaaattggtcgt |
549 |
Q |
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| T |
12149318 |
ttctatgtggttagactcaattggttaatgagcttcagaacaaattggtcgt |
12149267 |
T |
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