View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_1 (Length: 1075)

Name: NF1125_low_1
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_1
NF1125_low_1
[»] chr5 (6 HSPs)
chr5 (137-983)||(39952157-39953004)
chr5 (462-583)||(23920117-23920238)
chr5 (86-142)||(39953032-39953088)
chr5 (390-485)||(22917308-22917404)
chr5 (387-485)||(13596832-13596931)
chr5 (414-480)||(1685106-1685172)
[»] chr8 (6 HSPs)
chr8 (674-983)||(30339493-30339802)
chr8 (415-585)||(24847957-24848127)
chr8 (462-583)||(30344377-30344498)
chr8 (387-499)||(28940743-28940856)
chr8 (387-478)||(2680265-2680357)
chr8 (387-442)||(30344500-30344557)
[»] chr3 (4 HSPs)
chr3 (137-390)||(50416739-50416993)
chr3 (87-142)||(50416656-50416711)
chr3 (400-480)||(42614280-42614360)
chr3 (387-448)||(41053754-41053816)
[»] chr4 (7 HSPs)
chr4 (838-983)||(34230259-34230404)
chr4 (670-791)||(34230119-34230240)
chr4 (387-478)||(5482954-5483046)
chr4 (387-478)||(1694811-1694903)
chr4 (400-479)||(36678774-36678851)
chr4 (400-464)||(1967467-1967531)
chr4 (928-976)||(28546919-28546967)
[»] chr2 (4 HSPs)
chr2 (658-791)||(37221990-37222123)
chr2 (388-497)||(25123459-25123571)
chr2 (387-478)||(45003691-45003783)
chr2 (400-466)||(15084343-15084409)
[»] scaffold0001 (1 HSPs)
scaffold0001 (405-583)||(12729-12907)
[»] chr6 (8 HSPs)
chr6 (462-583)||(18985279-18985400)
chr6 (415-511)||(8746751-8746847)
chr6 (387-480)||(2627674-2627763)
chr6 (387-446)||(11681699-11681760)
chr6 (387-479)||(22978347-22978435)
chr6 (387-479)||(23809968-23810056)
chr6 (400-482)||(34218741-34218820)
chr6 (414-485)||(22721094-22721165)
[»] chr7 (6 HSPs)
chr7 (445-583)||(25350576-25350714)
chr7 (445-583)||(25356270-25356408)
chr7 (400-465)||(33097879-33097944)
chr7 (390-485)||(25731043-25731139)
chr7 (405-465)||(31299417-31299477)
chr7 (387-448)||(33105296-33105358)
[»] chr1 (3 HSPs)
chr1 (387-485)||(29693301-29693400)
chr1 (387-480)||(52037420-52037514)
chr1 (400-480)||(13624230-13624309)


Alignment Details
Target: chr5 (Bit Score: 688; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 688; E-Value: 0
Query Start/End: Original strand, 137 - 983
Target Start/End: Complemental strand, 39953004 - 39952157
Alignment:
Q  137 aacaatggccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagcttt 236  Q
    |||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||           |||||||||||||||||||||||    
T  39953004 aacaatggccatcaccaacgaatgaataaggatcaccacaaatgaaaaagaataactctgcgaatgaaaaaaaaaaatagttaagttagatgctagcttt 39952905  T
Q  237 ctcatcaatatatcactaaaataatagacacatccatgtcacattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttc 336  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952904 cacatcaatatatcactaaaataatagacacatccatgtcacattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggtttc 39952805  T
Q  337 tgatgttaaccatcaaaacaaagtttatacaatcgatgatttattctcatttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaat 436  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39952804 tgatgttaaccatcacaacaaagtttatacaatcgatgatttattctcatttgaattacgtactttttaaaaatttgctctaacggagagatgttcaaat 39952705  T
Q  437 tacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataac 536  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  39952704 tacagaacattgccatttttcataaatttgagaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaagcatggcataaaagatagcataac 39952605  T
Q  537 aattattgtcattacatacataatgtactgcagcataaatatagatgct-ccaaaaatgaagtgattagcgaaattagagcaccaacaaaaccagagttc 635  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  39952604 aattattgtcattacatacataatgtactgcagcataaatatagatgctgccaaaaatgaagtgattagcgaaattaaagcaccaacaaaaccagagttc 39952505  T
Q  636 aatctactcacaccatatccattgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaa 735  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952504 aatctactcacaccatatccattgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaa 39952405  T
Q  736 acatctgcttgaagtacaatgacccattatagtgaaacatcttgatccttcgatggnnnnnnnnnnnnnnnnnnnnnnnnntgctttcttagtggatgaa 835  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||                         |||||||||||||||||||    
T  39952404 acatctgcttgaagtacaatgacccgttatagtgaaacatcttgatccttcaatggaaaaagagcaaaataaaacgaaaaatgctttcttagtggatgaa 39952305  T
Q  836 attgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttga 935  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952304 attatatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttga 39952205  T
Q  936 atgagatgatttgaattgcttcagcgaaattactctcagccaagttat 983  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  39952204 atgagatgatttgaattgcttcagcgaaattactctcagccaagttat 39952157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 462 - 583
Target Start/End: Complemental strand, 23920238 - 23920117
Alignment:
Q  462 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 561  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  23920238 atttgtgaacgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcattaaagatagcataacaattattgtcattgcgtacataatg 23920139  T
Q  562 tactgcagcataaatatagatg 583  Q
    |||| ||||| |||||||||||    
T  23920138 tactccagcagaaatatagatg 23920117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 3e-23
Query Start/End: Original strand, 86 - 142
Target Start/End: Complemental strand, 39953088 - 39953032
Alignment:
Q  86 agaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39953088 agaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat 39953032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 390 - 485
Target Start/End: Complemental strand, 22917404 - 22917308
Alignment:
Q  390 aattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 485  Q
    ||||||||| |||||||||| |||||||||| ||| |||||||||||||||   ||||||||||| ||| |||||||| |||||||||| |||||||    
T  22917404 aattacgtaatttttaaaaaatttgctctaaaggatagatgttcaaattacgcgacattgccattcttcgtaaatttgagaacgaaggttgcataat 22917308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 387 - 485
Target Start/End: Complemental strand, 13596931 - 13596832
Alignment:
Q  387 ttgaattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 485  Q
    |||||||||||| ||||||||||  ||||||||| ||||||||||||||||||    ||||||||||  ||| |||||||| |||||||||| |||||||    
T  13596931 ttgaattacgtattttttaaaaaaattgctctaaaggagagatgttcaaattatgcgacattgccatgcttcgtaaatttgagaacgaaggttgcataat 13596832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 414 - 480
Target Start/End: Original strand, 1685106 - 1685172
Alignment:
Q  414 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 480  Q
    |||||| ||||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  1685106 ctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgc 1685172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 203; Significance: 1e-110; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 674 - 983
Target Start/End: Complemental strand, 30339802 - 30339493
Alignment:
Q  674 gatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaac 773  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  30339802 gatatacaaaaacaataatcagcaagagtttgagatactactgacctgttataacttgtcaaacatctgcttgaagtacaatgacccattatagtgaaaa 30339703  T
Q  774 atcttgatccttcgatggnnnnnnnnnnnnnnnnnnnnnnnnntgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatg 873  Q
    | ||||||||||| ||||                         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30339702 aacttgatccttcaatggaaaaagaacaaaatcaaatgaaaaatgctttcttagtggatgaaattgtatgaccatcagcaaaatattctcccatagcatg 30339603  T
Q  874 ttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgagatgatttgaattgcttcagcgaaattactctca 973  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||    
T  30339602 ttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaatgaaatgatttgaattgcttgagagaaattactctca 30339503  T
Q  974 gccaagttat 983  Q
    ||||||||||    
T  30339502 gccaagttat 30339493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 415 - 585
Target Start/End: Original strand, 24847957 - 24848127
Alignment:
Q  415 tctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaac 514  Q
    ||||| |||||||||||||||||| | ||||||| |||| ||| |||||||| ||||||||||||||||||||||||||||  ||||||||||||||  |    
T  24847957 tctaaaggagagatgttcaaattataaaacattgtcattcttcgtaaatttgagaacgaaggtcgcataatccgaatatttacgatgcatggtctaaggc 24848056  T
Q  515 atggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaatatagatgct 585  Q
    ||  ||| ||||||| ||||||||  ||||||||||||||||||| ||||||||||| |||||||||||||    
T  24848057 ataacatcaaagataacataacaaccattgtcattacatacataacgtactgcagcacaaatatagatgct 24848127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 462 - 583
Target Start/End: Complemental strand, 30344498 - 30344377
Alignment:
Q  462 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 561  Q
    ||||| ||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | |||||||||    
T  30344498 atttgtgaatgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcataaaagatagcataacaattattgtcattgcgtacataatg 30344399  T
Q  562 tactgcagcataaatatagatg 583  Q
    |||| || || |||||||||||    
T  30344398 tactacaacagaaatatagatg 30344377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 387 - 499
Target Start/End: Original strand, 28940743 - 28940856
Alignment:
Q  387 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 485  Q
    ||||||||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||| |||| ||| |||| ||| |||| |||||| ||||||    
T  28940743 ttgaattacgtactttttaaaaaatttgttctaaaggagagatgttcaaattacagaacattgtcattcttcgtaaacttgagaacaaaggtcccataat 28940842  T
Q  486 ccgaatatttgtga 499  Q
    | ||||||||||||    
T  28940843 ctgaatatttgtga 28940856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 2680265 - 2680357
Alignment:
Q  387 ttgaattacgtactttt-taaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 478  Q
    |||||||||||| |||| |||||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  2680265 ttgaattacgtatttttttaaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 2680357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 442
Target Start/End: Complemental strand, 30344557 - 30344500
Alignment:
Q  387 ttgaattacgtactttttaaaaa--tttgctctaatggagagatgttcaaattacaga 442  Q
    |||||||||||| |||| |||||  || ||||||| ||||||||||||||||||||||    
T  30344557 ttgaattacgtatttttcaaaaaaattagctctaaaggagagatgttcaaattacaga 30344500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 153; Significance: 2e-80; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 153; E-Value: 2e-80
Query Start/End: Original strand, 137 - 390
Target Start/End: Original strand, 50416739 - 50416993
Alignment:
Q  137 aacaatggccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaatgnnnnnnnnnnntagttaagttagatgctagcttt 236  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |           |||||||||||||||||||||||    
T  50416739 aacaatgcccatcaccaacgaaagaataaggatcaccagaaatgaaaaagaataactctgcgaaggaaaaaaaaa--tagttaagttagatgctagcttt 50416836  T
Q  237 ctcatcaatatatcactaaaataata---gacacatccatgtcacattatcagatatatccaaacttttagtctttcccaaatatgttgcaagctatggt 333  Q
    | |||||||||| |||||||||||||   |||||| ||||||||| ||||||||||||| |||||||||||||||||||| |||||||| |||| |||||    
T  50416837 cacatcaatataacactaaaataataaatgacacagccatgtcacgttatcagatatatgcaaacttttagtctttcccagatatgttgaaagcaatggt 50416936  T
Q  334 ttctgatgttaaccatcaaaacaaagtttatacaatcgatgatttattctcatttga 390  Q
    |||||||||||||||||| |||||||||||||||||| || ||||||||||||||||    
T  50416937 ttctgatgttaaccatcacaacaaagtttatacaatctataatttattctcatttga 50416993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 50416656 - 50416711
Alignment:
Q  87 gaaccgactcctttaagaacacccacaatcattgtagttaaagcagaattaacaat 142  Q
    ||||| |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  50416656 gaaccaactcctttaagaacacccacaatcgttgtagttaaagcagaattaacaat 50416711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 400 - 480
Target Start/End: Original strand, 42614280 - 42614360
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 480  Q
    ||||||||||||| || ||| | |||||||||||||||||  |||||||  ||| |||  ||||||| |||||||||||||    
T  42614280 tttttaaaaatttactttaaagaagagatgttcaaattacgaaacattgttattcttcgaaaatttgagaacgaaggtcgc 42614360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 387 - 448
Target Start/End: Complemental strand, 41053816 - 41053754
Alignment:
Q  387 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattg 448  Q
    ||||||||| || |||||||||| ||||||||||  | |||||||||||||||| ||||||||    
T  41053816 ttgaattacatattttttaaaaaatttgctctaaatgtgagatgttcaaattacggaacattg 41053754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 114; Significance: 3e-57; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 838 - 983
Target Start/End: Original strand, 34230259 - 34230404
Alignment:
Q  838 tgtatgaccatcagcaaaatattctcccatagcatgttttctgattcatctatcacctcataaatgtcatcaaattaatcacttttcataattgttgaat 937  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| | ||||||||| ||||||||| |||    
T  34230259 tgtatgaccatcagcaaaatattctcctatagtatgttttctgattcatctatcacctcataaatgtcatcaaacttatcacttttaataattgttcaat 34230358  T
Q  938 gagatgatttgaattgcttcagcgaaattactctcagccaagttat 983  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  34230359 gagatgatttgaattgcttgagagaaattactctcagccaagttat 34230404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 110; E-Value: 7e-55
Query Start/End: Original strand, 670 - 791
Target Start/End: Original strand, 34230119 - 34230240
Alignment:
Q  670 aaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtg 769  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34230119 aaaggatgtacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatgacccattatagtg 34230218  T
Q  770 aaacatcttgatccttcgatgg 791  Q
    ||| ||||||||||||| ||||    
T  34230219 aaaaatcttgatccttcaatgg 34230240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 5483046 - 5482954
Alignment:
Q  387 ttgaattacgtacttttt-aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 478  Q
    |||||||||||| ||||| ||||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  5483046 ttgaattacgtatttttttaaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 5482954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 387 - 478
Target Start/End: Complemental strand, 1694903 - 1694811
Alignment:
Q  387 ttgaattacgta-ctttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 478  Q
    |||||||||| | ||||| ||||| ||||||||| ||||| |||||||||| || ||||||||| ||| ||| |||||||| |||||||||||    
T  1694903 ttgaattacgcatcttttaaaaaaattgctctaaaggagatatgttcaaatcacggaacattgctattcttcgtaaatttgagaacgaaggtc 1694811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 400 - 479
Target Start/End: Original strand, 36678774 - 36678851
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 479  Q
    ||||||||||||| ||||||   ||||||||| |||||||| |||||||| ||||||| |||||||| ||||||||||||    
T  36678774 tttttaaaaatttactctaaa--agagatgtttaaattacaaaacattgctatttttcgtaaatttgagaacgaaggtcg 36678851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 400 - 464
Target Start/End: Original strand, 1967467 - 1967531
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatt 464  Q
    |||||||||||||||| |||  |||| ||||||||||||| |||||||| |||| ||| ||||||    
T  1967467 tttttaaaaatttgctttaaaagagaaatgttcaaattacggaacattgtcattcttcgtaaatt 1967531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 928 - 976
Target Start/End: Original strand, 28546919 - 28546967
Alignment:
Q  928 attgttgaatgagatgatttgaattgcttcagcgaaattactctcagcc 976  Q
    |||||| |||||||||||||||||||||| ||  |||||||||||||||    
T  28546919 attgttaaatgagatgatttgaattgcttgagaaaaattactctcagcc 28546967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 3e-57; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 658 - 791
Target Start/End: Complemental strand, 37222123 - 37221990
Alignment:
Q  658 tgacatctgcggaaaggatatacaaaaacaataatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatga 757  Q
    ||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37222123 tgacatctgcgaaaaggatatacaaaaacaattatcagcaagagttcgagatactactgacctggtataacttgtcaaacatctgcttgaagtacaatga 37222024  T
Q  758 cccattatagtgaaacatcttgatccttcgatgg 791  Q
    ||||||||||||||| ||||||||| ||| ||||    
T  37222023 cccattatagtgaaaaatcttgatctttcaatgg 37221990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 388 - 497
Target Start/End: Original strand, 25123459 - 25123571
Alignment:
Q  388 tgaattacgtacttttt---aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataa 484  Q
    ||||||||||| |||||   |||||||||||| ||  |||||||||||||||||| |||||||| |||| ||| |||| ||| |||||||||| ||||||    
T  25123459 tgaattacgtatttttttaaaaaaatttgctccaaatgagagatgttcaaattacggaacattgtcattcttcgtaaacttgagaacgaaggttgcataa 25123558  T
Q  485 tccgaatatttgt 497  Q
    |||||| ||||||    
T  25123559 tccgaacatttgt 25123571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 387 - 478
Target Start/End: Original strand, 45003691 - 45003783
Alignment:
Q  387 ttgaattacgtacttttta-aaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtc 478  Q
    |||||||||||| |||||  |||||||||||||| ||| ||||||||||||||| ||| |||| | || |||||||||||| |||||||||||    
T  45003691 ttgaattacgtattttttttaaaatttgctctaaaggaaagatgttcaaattacggaatattgtcgttcttcataaatttgagaacgaaggtc 45003783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 400 - 466
Target Start/End: Original strand, 15084343 - 15084409
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttg 466  Q
    ||||||||| ||| |||||| ||||| ||||||||||||| ||||||||| ||| ||| ||||||||    
T  15084343 tttttaaaattttactctaaaggagatatgttcaaattacggaacattgctattcttcgtaaatttg 15084409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 103; Significance: 1e-50; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 103; E-Value: 1e-50
Query Start/End: Original strand, 405 - 583
Target Start/End: Complemental strand, 12907 - 12729
Alignment:
Q  405 aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcat 504  Q
    ||||| || |||||| |||||||||||||||| |   || ||||||||| ||| |||||||  |||||||||||||||||||||||||||||||||||||    
T  12907 aaaaaattactctaaaggagagatgttcaaatgaggaaatattgccattcttcgtaaatttaagaacgaaggtcgcataatccgaatatttgtgatgcat 12808  T
Q  505 ggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatgtactgcagcataaatatagatg 583  Q
    | |||||  |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||| ||||||    
T  12807 gatctaaggcatggcataaaagataacataacaatcattgtcattacatacataatgtactgcagcagaaatgtagatg 12729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 90; Significance: 6e-43; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 6e-43
Query Start/End: Original strand, 462 - 583
Target Start/End: Original strand, 18985279 - 18985400
Alignment:
Q  462 atttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattgtcattacatacataatg 561  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| | |||||||||    
T  18985279 atttgtgaacgaaggtcacataatccgaatatttgtgatgcatggtctaagacatggcattaaagatagcataacaattattgtcattgcgtacataatg 18985378  T
Q  562 tactgcagcataaatatagatg 583  Q
    |||| ||||| |||||||||||    
T  18985379 tactccagcagaaatatagatg 18985400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 415 - 511
Target Start/End: Original strand, 8746751 - 8746847
Alignment:
Q  415 tctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaa 511  Q
    ||||| |||| |||||||||||||  |||||||| |||| ||| |||||||| |||| |||||||||||||| ||||||||  |||| |||||||||    
T  8746751 tctaaaggagggatgttcaaattatggaacattgtcattcttcgtaaatttgagaacaaaggtcgcataatctgaatatttacgatgtatggtctaa 8746847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 387 - 480
Target Start/End: Original strand, 2627674 - 2627763
Alignment:
Q  387 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 480  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||| ||| ||| |||||||| |||||||||||||    
T  2627674 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgctattcttcgtaaatttgagaacgaaggtcgc 2627763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 387 - 446
Target Start/End: Original strand, 11681699 - 11681760
Alignment:
Q  387 ttgaattacgtacttttt--aaaaatttgctctaatggagagatgttcaaattacagaacat 446  Q
    ||||||||||||||||||  ||||| || |||||| ||||||||||||||||||||||||||    
T  11681699 ttgaattacgtacttttttaaaaaaattactctaaaggagagatgttcaaattacagaacat 11681760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 387 - 479
Target Start/End: Original strand, 22978347 - 22978435
Alignment:
Q  387 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 479  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||   || ||| |||||||| ||||||||||||    
T  22978347 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcg 22978435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 387 - 479
Target Start/End: Complemental strand, 23810056 - 23809968
Alignment:
Q  387 ttgaattacgtactttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcg 479  Q
    |||||||||||| |||| ||||| ||||||||   ||||||||||||||||||| |||||||   || ||| |||||||| ||||||||||||    
T  23810056 ttgaattacgta-ttttaaaaaaattgctcta---gagagatgttcaaattacataacattgttgttcttcgtaaatttgagaacgaaggtcg 23809968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 400 - 482
Target Start/End: Complemental strand, 34218820 - 34218741
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcat 482  Q
    ||||||||||||||||   | ||||||||||||||||||| ||| ||||  ||| |||||||||| |  ||||||||||||||    
T  34218820 tttttaaaaatttgct---aaggagagatgttcaaattacggaatattgtaattcttcataaattcgaaaacgaaggtcgcat 34218741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 414 - 485
Target Start/End: Complemental strand, 22721165 - 22721094
Alignment:
Q  414 ctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 485  Q
    |||||| |||||||||||||||||||   ||||||||||| ||| | |||||| ||||| |||| |||||||    
T  22721165 ctctaaaggagagatgttcaaattacgcgacattgccattcttcgttaatttgagaacgtaggttgcataat 22721094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 83; Significance: 9e-39; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 445 - 583
Target Start/End: Original strand, 25350576 - 25350714
Alignment:
Q  445 attgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattg 544  Q
    |||| |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||| ||||    
T  25350576 attgtcattcttcgtaaatttgagaacgaaggacgcataatccgaatatttgtgatgcatggtctaaggcatgacataaaaaataacataacaatcattg 25350675  T
Q  545 tcattacatacataatgtactgcagcataaatatagatg 583  Q
    | |||||||| |||||||||| |||||||||||||||||    
T  25350676 ttattacatagataatgtactacagcataaatatagatg 25350714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 83; E-Value: 9e-39
Query Start/End: Original strand, 445 - 583
Target Start/End: Original strand, 25356270 - 25356408
Alignment:
Q  445 attgccatttttcataaatttgggaacgaaggtcgcataatccgaatatttgtgatgcatggtctaaaacatggcataaaagatagcataacaattattg 544  Q
    |||| |||| ||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||  |||| ||||||| ||| ||||||||| ||||    
T  25356270 attgtcattcttcgtaaatttgagaacgaaggacgcataatccgaatatttgtgatgcatggtctaaggcatgacataaaaaataacataacaatcattg 25356369  T
Q  545 tcattacatacataatgtactgcagcataaatatagatg 583  Q
    | |||||||| |||||||||| |||||||||||||||||    
T  25356370 ttattacatagataatgtactacagcataaatatagatg 25356408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 400 - 465
Target Start/End: Original strand, 33097879 - 33097944
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaattt 465  Q
    |||| ||||||||||||||| ||||||||||||||||||| |||||||| |||| ||| |||||||    
T  33097879 ttttaaaaaatttgctctaaaggagagatgttcaaattacggaacattgtcattcttcgtaaattt 33097944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 390 - 485
Target Start/End: Complemental strand, 25731139 - 25731043
Alignment:
Q  390 aattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 485  Q
    ||||||||| ||||||||||  ||||||||| |||||||||||||||||||   |||||| || | ||| |||||||| |||||||||| |||||||    
T  25731139 aattacgtattttttaaaaaaattgctctaaaggagagatgttcaaattacgcgacattgtcagtcttcgtaaatttgagaacgaaggttgcataat 25731043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 405 - 465
Target Start/End: Complemental strand, 31299477 - 31299417
Alignment:
Q  405 aaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaattt 465  Q
    ||||||||| ||||| ||||||||||| ||||||| |||||||| |||| |||||||||||    
T  31299477 aaaaatttgttctaaaggagagatgttaaaattacggaacattgtcattcttcataaattt 31299417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 387 - 448
Target Start/End: Complemental strand, 33105358 - 33105296
Alignment:
Q  387 ttgaattacgtacttttt-aaaaatttgctctaatggagagatgttcaaattacagaacattg 448  Q
    |||||||||||| ||||| |||||||||||| ||  |||||||||||||||||| ||||||||    
T  33105358 ttgaattacgtatttttttaaaaatttgctccaaaagagagatgttcaaattacggaacattg 33105296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 7e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 387 - 485
Target Start/End: Complemental strand, 29693400 - 29693301
Alignment:
Q  387 ttgaattacgtactttttaaaaa-tttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgcataat 485  Q
    |||||||||||| |||||||||| |||| ||||| | |||||||||||||||||   ||||||||||| ||| |||||||| |||||||||| |||||||    
T  29693400 ttgaattacgtattttttaaaaaatttgttctaaagaagagatgttcaaattacgcgacattgccattcttcgtaaatttgagaacgaaggttgcataat 29693301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 387 - 480
Target Start/End: Original strand, 52037420 - 52037514
Alignment:
Q  387 ttgaattacgtactttttaaaaat-ttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 480  Q
    |||||||| ||| ||||||||||  || |||||| ||||||||||||||||||| ||||||||| ||| ||| ||| |||| |||||||||||||    
T  52037420 ttgaattatgtattttttaaaaaaattcctctaaaggagagatgttcaaattacggaacattgctattcttcgtaattttgagaacgaaggtcgc 52037514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 400 - 480
Target Start/End: Complemental strand, 13624309 - 13624230
Alignment:
Q  400 tttttaaaaatttgctctaatggagagatgttcaaattacagaacattgccatttttcataaatttgggaacgaaggtcgc 480  Q
    ||||||||||||| |||||| ||||||||||||||||||| ||||||| | ||| ||| ||| |||| |||||||||||||    
T  13624309 tttttaaaaattt-ctctaaaggagagatgttcaaattacggaacattcctattcttcgtaattttgagaacgaaggtcgc 13624230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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