View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_102 (Length: 213)
Name: NF1125_low_102
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_102 |
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Alignment Details
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 31132466 - 31132352
Alignment:
| Q |
1 |
agcttgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaa |
100 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31132466 |
agcttgaaaaatcggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcaaaactcagcccaa |
31132367 |
T |
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| Q |
101 |
tcggatccccatatt |
115 |
Q |
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||||||||||||||| |
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| T |
31132366 |
tcggatccccatatt |
31132352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 5 - 115
Target Start/End: Complemental strand, 31127754 - 31127644
Alignment:
| Q |
5 |
tgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaatcgg |
104 |
Q |
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|||||||||| |||| |||||||||||||||||| ||||||||| |||||||| ||| || |||||||||| |||||||||||||||||||||||||||| |
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| T |
31127754 |
tgaaaaaccgcataactataaggatccatcccaataaagctccactttccatcatcaacttgactcaaccatctctcaggtcgaaactcagcccaatcgg |
31127655 |
T |
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| Q |
105 |
atccccatatt |
115 |
Q |
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|||||||||| |
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| T |
31127654 |
gtccccatatt |
31127644 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 31078440 - 31078326
Alignment:
| Q |
1 |
agcttgaaaaaccggataagtataaggatccatcccaacaaagctccattttccatcgtcagctcgactcaaccacctctcaggtcgaaactcagcccaa |
100 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| ||| ||||| || ||||| ||| || |||||||||||||||| |||||||||||||||||| |
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| T |
31078440 |
agcttgaaaaaccgcataactataaggatccatcccaataaaactccacttcccatcctcatcttgactcaaccacctctccggtcgaaactcagcccaa |
31078341 |
T |
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| Q |
101 |
tcggatccccatatt |
115 |
Q |
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|| |||||||||| |
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| T |
31078340 |
tcaagtccccatatt |
31078326 |
T |
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