View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_16 (Length: 501)
Name: NF1125_low_16
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 30 - 490
Target Start/End: Original strand, 38569320 - 38569787
Alignment:
| Q |
30 |
tcaattatggcttgaaacttaagaaaccggctcatatgaaattacatgcctttagtgatgcagattggggagactacttagatgatt-cagtg------t |
122 |
Q |
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| T |
38569320 |
tcaattatggcttgaaacttaagaaaccggctcatatgaaattacatgcctttagtgatgcaaattggggagactacttagatgatcacacttctacctt |
38569419 |
T |
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| Q |
123 |
cgtggaggtaatttattttggaggtaattcagtgttgtggctatccaagagacagagaactgtggcacgatcatcaccggaagctgaatatcgttcagta |
222 |
Q |
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| T |
38569420 |
aacgtttgtaatttattttggaggtaattcagtgtcgtggctatccaagagacagagaactgtggcacgatcatcaccggaagctgaatatcattcagta |
38569519 |
T |
|
| Q |
223 |
gcaaatgctacagtagaggtcatgtggttgacaaaccttctcagtggattacatgtcaaaacaccagctcctcatctgttctgtgacaacatcagagcac |
322 |
Q |
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| T |
38569520 |
gcaaatgctgcagcagaggtcatgtggttgacaaaccttctcagtggattacatgtcaaaacaccagctcctcatctgttctgtgacaacatcagagcac |
38569619 |
T |
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| Q |
323 |
ctacttatgctctaatctagtttttcactctcaaatgaagcatatcacacttgactaccattatgtacgtcaacttgttcaattgggtcaactctgtatg |
422 |
Q |
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||||||||||||||||| |||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38569620 |
ctacttatgctctaatccagtttttcactctcgaatgaagcatatcgcacttgactaccattatgtacgtcaacttgttcaattgggtcaactctgtatg |
38569719 |
T |
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| Q |
423 |
tctcacatttctaccaaagatcaacctgcagacattctcataaagtctttgtccaaacccaggttcat |
490 |
Q |
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| T |
38569720 |
tctcacatttctaccaaagatcaacctgcagacattctcataaagtctttgtccaaacccaggttcat |
38569787 |
T |
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