View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_17 (Length: 489)
Name: NF1125_low_17
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 198; Significance: 1e-107; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 9 - 251
Target Start/End: Original strand, 8041478 - 8041720
Alignment:
| Q |
9 |
gaataatatttacggtacatgcatggagagaactaataacacgactcttatccttttacctacttaacttaaagagacacacatgaatacaagaggagat |
108 |
Q |
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| T |
8041478 |
gaataatatttacggtacatgcatggagagaactaataacatgactcttatctttttacctacttaacttaaagagacacacatgaatacaataggagat |
8041577 |
T |
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| Q |
109 |
tgatgtttcgtgcatgccactcttaattaaaacaatgcaannnnnnngacaaacttaaaacaatggcaattggacttgaacagtatgatttgttcaagtg |
208 |
Q |
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| T |
8041578 |
tgatgtttcgtgcatgccactcttaattaaaacaatgcaatttttttgacaaacttaaaacaatggcaattggacttgaacagtatgatttgttcaagtg |
8041677 |
T |
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| Q |
209 |
tactctcgaacggcaaaaagaaagaaacctaccggaagttgtg |
251 |
Q |
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| T |
8041678 |
tactttcgaacggcaaaaataaagaaacataccggaagttgtg |
8041720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 74; Significance: 1e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 402 - 483
Target Start/End: Complemental strand, 47907376 - 47907295
Alignment:
| Q |
402 |
aactttaaatacaatgctacttacaatacattttgaatatgaccttatccaaaccttgtctccaaaacaccgaaactcttcc |
483 |
Q |
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| T |
47907376 |
aactttaaatacaatgctatttacaatacattttgaatatgaccttatccaaaccttgtctccaaaacaccgaaacacttcc |
47907295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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