View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_18 (Length: 482)
Name: NF1125_low_18
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_18 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 64 - 287
Target Start/End: Original strand, 37602064 - 37602284
Alignment:
| Q |
64 |
ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca |
163 |
Q |
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| T |
37602064 |
ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatgc-atcaaatccactactttacg |
37602162 |
T |
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| Q |
164 |
atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatggttatgtgactattatcatgcc |
263 |
Q |
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| T |
37602163 |
gtccaaatgtaacgtgtcatattggagcttttt--acaaatctgcaaattgtacttcaaatctaatgcatggcctatggttacgtgactattgtcatgcc |
37602260 |
T |
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| Q |
264 |
atcaagtgatcaaatctttttcag |
287 |
Q |
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|||||||||||||||||||||||| |
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| T |
37602261 |
atcaagtgatcaaatctttttcag |
37602284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 64 - 287
Target Start/End: Complemental strand, 46558927 - 46558707
Alignment:
| Q |
64 |
ttattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaacccactactttaca |
163 |
Q |
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| T |
46558927 |
ttattcaaatagatgtaaatgaataggcatcagctactaccatcaaaatatggctgcaagttctacacatgagtaatgc-atcaaatccactactttacg |
46558829 |
T |
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| Q |
164 |
atctaaatgtaacgtgtccaattggagctttttctacaaatctgcaaattgtacttcaaatccaatgcatggcctatggttatgtgactattatcatgcc |
263 |
Q |
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| T |
46558828 |
gtccaaatgtaacgtgtcatattggagcttttt--acaaatctgcaaattgtacttcaaatctaatgcatggcctatggttacgtgactattgtcatgcc |
46558731 |
T |
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| Q |
264 |
atcaagtgatcaaatctttttcag |
287 |
Q |
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| T |
46558730 |
atcaagtgatcaaatctttttcag |
46558707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 60 - 163
Target Start/End: Original strand, 22778625 - 22778728
Alignment:
| Q |
60 |
cacattattgaaatagatgtaaatgagtaggcatcagctactaccattaaaatatggctgcaagttctacacatgaataatgccatcaaa-cccactact |
158 |
Q |
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||||||||| |||||||||||||||| ||||||||| ||||| ||| |||||||||||||||||||||||| ||||||||| ||||||| ||||||||| |
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| T |
22778625 |
cacattattcaaatagatgtaaatgaataggcatcaactacttacatcaaaatatggctgcaagttctacacgtgaataatg-catcaaaccccactact |
22778723 |
T |
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| Q |
159 |
ttaca |
163 |
Q |
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||||| |
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| T |
22778724 |
ttaca |
22778728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 22778747 - 22778820
Alignment:
| Q |
215 |
tacttcaaatccaatgcatggcctatggttatgtgactattatcatgccatcaagtgatc-aaatctttttcag |
287 |
Q |
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| T |
22778747 |
tacttcaaatcaaatgcatggcctatggctatgtgactatcgtcatgccatcaagtgatcaaaatctttttcag |
22778820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 362 - 401
Target Start/End: Complemental strand, 16868 - 16829
Alignment:
| Q |
362 |
cttctagactcaattaaataattcgaaacggacattacac |
401 |
Q |
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| T |
16868 |
cttctagactcaattaaataattcgaaacgggcgttacac |
16829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 364 - 392
Target Start/End: Complemental strand, 27846704 - 27846676
Alignment:
| Q |
364 |
tctagactcaattaaataattcgaaacgg |
392 |
Q |
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| T |
27846704 |
tctagactcaattaaataattcgaaacgg |
27846676 |
T |
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