View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_low_22 (Length: 470)
Name: NF1125_low_22
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_22 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 8 - 467
Target Start/End: Complemental strand, 17339694 - 17339238
Alignment:
| Q |
8 |
tcatagggttagaaaagaagcagtcaacttgatatgggcaagggtgatgctagatgtggtggcccagaagagcaacatggcctagtaagttgggaaggcc |
107 |
Q |
| |
|
||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
17339694 |
tcataggattacaaaagaagcagtcaacttgatatgggcaagggtgatgctagatgtggtggcccagaggagcaacatggcctagtaagttgggaaggcc |
17339595 |
T |
|
| Q |
108 |
caaattgatcatcatcatcaaacaaagaaaatcgctcttttaaacttttaaaattgctcttacgcacttgaaaattaccttaatactcaaaccacaggta |
207 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || ||||||||||||||||| ||| |
|
|
| T |
17339594 |
caaattgatcatcatca---aacaaaggaaatcgctcttttaaacttttaaaattgctcttacgcatctgaaaatgactttaatactcaaaccacatgta |
17339498 |
T |
|
| Q |
208 |
attaccgtgcactcatgaactaaaaatattaaagagtgaaagacagtaaactaatcttggaggtattgaagctaattttggatgtgtgagatcaatttca |
307 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| || |||||| |||||||| |
|
|
| T |
17339497 |
actactatgcactcatgaactaaaaatattaaagagtgaatgacagtaaactaatgatggaggtattgaagctaattttgggtgcgtgagagcaatttca |
17339398 |
T |
|
| Q |
308 |
gaagtttaaagagcaatactctcaatcagagatggtggaatgaccgtactaccattaagtagtaataactcattaattcaataagattgatgactcattg |
407 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17339397 |
gaagtttaaagagcaatactctcaaacagaggcggtggaatgaccgtactaccattaagtaataataactcattaattcaataagattgatgactcatta |
17339298 |
T |
|
| Q |
408 |
atttgtttctttagtggtggttggggttcactccataccttgtctatattatgcattgtt |
467 |
Q |
| |
|
||||||||||||| |||||| || ||||| | | |||||| ||||||||| |||||| |
|
|
| T |
17339297 |
gtttgtttctttagcggtggtcggatttcacccaagaccttgcttatattatgtattgtt |
17339238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University