View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_24 (Length: 468)
Name: NF1125_low_24
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 145 - 459
Target Start/End: Original strand, 25329540 - 25329854
Alignment:
| Q |
145 |
ataaaaatggttagtgtcatttcagatattacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttcg |
244 |
Q |
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| T |
25329540 |
ataaaaatggttagtgtcatttcagatattacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttcg |
25329639 |
T |
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| Q |
245 |
acatcttcctgcaggaattcaaggtcttgtatttgcttagtgcaatttttagatgataaacttcaaattaaaatcaatttatgtattagatgcatatata |
344 |
Q |
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| T |
25329640 |
acatcttcctgcaggaaatcaaggtcttgtatttgcttagtgcaatttttaaatgataaacttcaaattaaaatcaatttatgtattagatgc----ata |
25329735 |
T |
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| Q |
345 |
ttgtcctcgc----atatgttccttattgtccacactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctga |
440 |
Q |
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|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25329736 |
ttgtcctcacatatatatgttccttattgtccacactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctga |
25329835 |
T |
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| Q |
441 |
aaatatacattagaataat |
459 |
Q |
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| T |
25329836 |
aaatatacattagaataat |
25329854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 42 - 142
Target Start/End: Original strand, 25328863 - 25328964
Alignment:
| Q |
42 |
gttacatgttgatgttggtaacaacacttccactttgtagaagattgtttgtttggga-tgttccttgcttgataatcttatttggaggttcgaaggatt |
140 |
Q |
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| T |
25328863 |
gttacatgttgatgttggtaacaacacttccactttgtagaagattgtttgtttgggagtgttccttgcttgataattttatttggaggttcgaaggatt |
25328962 |
T |
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| Q |
141 |
tc |
142 |
Q |
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|| |
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| T |
25328963 |
tc |
25328964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 374 - 458
Target Start/End: Complemental strand, 9989097 - 9989013
Alignment:
| Q |
374 |
cactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctgaaaatatacattagaataa |
458 |
Q |
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| T |
9989097 |
cactgaccttgtatttgtgatatccatcgcacgcaatatctccatcatcctcgtacatatttgctgaaaatatacattagaataa |
9989013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 173 - 257
Target Start/End: Original strand, 25323204 - 25323288
Alignment:
| Q |
173 |
ttacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttcgacatcttcctgca |
257 |
Q |
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| T |
25323204 |
ttacctggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttgcacatcttcctgca |
25323288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 374 - 458
Target Start/End: Complemental strand, 14332130 - 14332046
Alignment:
| Q |
374 |
cactgaccttgtatttgtgatatccatcgcatgcaatatctccatcaccctcgtacatattcgctgaaaatatacattagaataa |
458 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||| |||||||||||||||| |
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| T |
14332130 |
cactgaccttgtatttgtgatatccatcgcacgcaatatctccatcatcctcgtacatatttgctgaagatatacattagaataa |
14332046 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 8e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 174 - 254
Target Start/End: Original strand, 5220305 - 5220385
Alignment:
| Q |
174 |
tacccggaataagtcttgaccatgatattgaaaatctataggcatctaagcccatgttggccatgagttcgacatcttcct |
254 |
Q |
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|||| ||||||||||||||||||||||| |||||||||||||||||||||||||| || | ||| |||| |||||| |||| |
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| T |
5220305 |
tacctggaataagtcttgaccatgatatggaaaatctataggcatctaagcccattttagacattagttggacatcatcct |
5220385 |
T |
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