View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_27 (Length: 457)
Name: NF1125_low_27
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_27 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 83 - 450
Target Start/End: Complemental strand, 24022353 - 24021987
Alignment:
| Q |
83 |
ctatatcccaccttccactttgttttatcgagggttccttcgtatttaacattttttgtattatataacatggaattaacttcttttatgagaatcattc |
182 |
Q |
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| T |
24022353 |
ctatatcccaccttccactttgttttatcgagggttccttcgtatttaacattttttgtattatataa-atggaattaacttcttttatgagaatcattc |
24022255 |
T |
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| Q |
183 |
tagttaataataattaatataaaaccaaaacaaactcattcattctatccaatcgattgccaaactattaacaatgaccaatagacaatcattcatctat |
282 |
Q |
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| T |
24022254 |
tagttaataataattaatataaaaccaaaacaaactcattcattctatccaatcgattgccaaactattaacaatgaccaatagacaatcattcatctat |
24022155 |
T |
|
| Q |
283 |
gttattataacatgacaaagactgtaaaaccacatgcatgaattaccacatattcaaacaataaaaaatattaggaaagaacttacttccaatgagtcga |
382 |
Q |
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| T |
24022154 |
gttattataacatgacaaagactgtaaaaccacatgcatgaattaccacatattcaaacaacaaaagatattaggaaagaacttacttccaatgagtcga |
24022055 |
T |
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| Q |
383 |
agttgacaccaaactttcaacttataagaaccgacatagattgtaagaagttctaattctctctgctc |
450 |
Q |
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| T |
24022054 |
agttgacaccaaactttcaacgtataagaaccgacatagattgtaagaagttctaattctctctgctc |
24021987 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 363 - 444
Target Start/End: Complemental strand, 24031606 - 24031525
Alignment:
| Q |
363 |
acttacttccaatgagtcgaagttgacaccaaactttcaacttataagaaccgacatagattgtaagaagttctaattctct |
444 |
Q |
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| T |
24031606 |
acttacttccaatgccttgaagttgaaaccaaactttcaacataagagaaccgacatggattgtcatcagtgctaattctct |
24031525 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 249 - 424
Target Start/End: Original strand, 23846837 - 23847011
Alignment:
| Q |
249 |
attaacaatgaccaatagacaatcattcatctatgttattataacatgacaaagactgtaaaaccacatgcatgaattaccacatattcaaacaataaaa |
348 |
Q |
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| T |
23846837 |
attaacaatgaccaatagataatcattcacacatgttattataatatgacacagatcttaaaacaacattca-gaattaccatatatccaaacaattgaa |
23846935 |
T |
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| Q |
349 |
aatattaggaaagaacttacttccaatgagtcgaagttgacaccaaactttcaacttataagaaccgacatagatt |
424 |
Q |
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| T |
23846936 |
aataatataagagtacttacttcgaattagttgaagttgaaatcaaactttcaatataagagaaccgacgtagatt |
23847011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 249 - 301
Target Start/End: Complemental strand, 23846112 - 23846060
Alignment:
| Q |
249 |
attaacaatgaccaatagacaatcattcatctatgttattataacatgacaaa |
301 |
Q |
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| T |
23846112 |
attaacaatgaccaatagataattattcacatatgttattataacatgacaaa |
23846060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 322 - 446
Target Start/End: Complemental strand, 23841013 - 23840889
Alignment:
| Q |
322 |
gaattaccacatattcaaacaataaaaaatattaggaaagaacttacttccaatgagtcgaagttgacaccaaactttcaacttataagaaccgacatag |
421 |
Q |
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||||||||| ||||||||||||| |||||| || | || ||||||||| ||||||| ||| |||| || ||||||||||| || ||||| |||||| |
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| T |
23841013 |
gaattaccatatattcaaacaattgaaaatagtacaagagtacttacttcgaatgagttgaacttgaaactaaactttcaacataagagaactgacataa |
23840914 |
T |
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| Q |
422 |
attgtaagaagttctaattctctct |
446 |
Q |
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||| | | || || ||||||||||| |
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| T |
23840913 |
atttttaaaaattttaattctctct |
23840889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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