View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_3 (Length: 849)
Name: NF1125_low_3
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 690; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 690; E-Value: 0
Query Start/End: Original strand, 11 - 821
Target Start/End: Complemental strand, 1493492 - 1492688
Alignment:
| Q |
11 |
cacagaagcatcacatccctgtccacacatatacaaacacatcattataaagtttaatagcaactaatgtaaaacacagagtccgacacagacacttgag |
110 |
Q |
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| T |
1493492 |
cacagaagcatcacatccctgtccacacatatacaaacacatcattataaagtttaatagtaactaatgtaaaacacagagtccgacacagacacttga- |
1493394 |
T |
|
| Q |
111 |
cagcaccacagatacacgtcgacactgctaattccaaaaacatagaacactgacctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgct |
210 |
Q |
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|| || ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1493393 |
ca-caacacagatacacgtcgacactgctaattccaaaaacattgaacactgacctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgct |
1493295 |
T |
|
| Q |
211 |
gtaacaaatgtttgctgaagtttcatctcaactgcattttttactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttg |
310 |
Q |
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| T |
1493294 |
gtaacaaatgtttgctgaagtttcatctcaactgcatttttgactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttg |
1493195 |
T |
|
| Q |
311 |
catgacaattagttatgagctgcaaaagaaacaggttaacaaggaaggtgaggaagctgagagaacccatttcttggannnnnnnnnnnnnnnngttcta |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |
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| T |
1493194 |
catgacaattagttatgagctgcaaaagaaacaggttaacaaggaaggtgaggaagctgagagaacccatttcttggattttttttttgtttttggtcta |
1493095 |
T |
|
| Q |
411 |
tagtgtctgaaatattaggctcagtttggtgattgcatgcttagtatttaaatatacagaagaaacaatagaaggaaaataactacactacaagccaaat |
510 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
1493094 |
tagtgtctgaaatattaggctcagtttggtgattgcatgcttagtatttaaatatacacaggaaacaatagaaggaaaataactacactacaagccaaaa |
1492995 |
T |
|
| Q |
511 |
tgctgattgaaaaagtgttgtgaactttgagaatatctgacatagcactcactgtgatggtcacattaattaatttgtgtgatgaggttgaagtggaagc |
610 |
Q |
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| T |
1492994 |
tgctgattgaaaaagtgttgtgaactttgagaatatctgacatagcactcactgtgatggtcacattaatt----tgtgtgatgaggttgaagtggaagc |
1492899 |
T |
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| Q |
611 |
tcttgaagtgtggtgatactacttctttattaaaagtgcatattaaatttatgttatacatagaaacctagtatggtcccacacatagtgtaaggtcctt |
710 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1492898 |
tcttgaagtgtggtgatactacttctttattaaaagtgcatattaaatttatgttatacatagaaacctagtatggtcccacacatagtgtaaggtcctt |
1492799 |
T |
|
| Q |
711 |
tttctatatataacttggtatagtgagatagtagctgtatacacaaacttcaattgccacttcaattcttatcttatcatatgatagccattttgtatat |
810 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
1492798 |
tttctatatataacttggtatagtgagatagtagctgtatacacaaacttcaatggccacttcaattcttatcttatcatatgatagccactttgtatat |
1492699 |
T |
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| Q |
811 |
tactttatggt |
821 |
Q |
| |
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||||||||||| |
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| T |
1492698 |
tactttatggt |
1492688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 234 - 365
Target Start/End: Complemental strand, 1487442 - 1487313
Alignment:
| Q |
234 |
catctcaactgcattttttactattgattcaacatttggacaagtgtttctgtaataatcaactctaagttttgttgcatgacaattagttatgagctgc |
333 |
Q |
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||||| ||||| ||||| || |||||||||| || || ||| |||||||||||||| ||||| |||||||||| ||| |||||||| ||| ||||| |
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| T |
1487442 |
catcttaactgtattttggaccattgattcaaaatatgaacatgtgtttctgtaatagtcaacactaagttttgatgc--gacaattatttacaagctgt |
1487345 |
T |
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| Q |
334 |
aaaagaaacaggttaacaaggaaggtgaggaa |
365 |
Q |
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| T |
1487344 |
aagagaaacagattaacaaggaaggtgaggaa |
1487313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 39800609 - 39800538
Alignment:
| Q |
163 |
acctgaacaaaacaatcatggaagaagagcctaagtgtagcaggtgctgtaacaaatgtttgctgaagtttc |
234 |
Q |
| |
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|||||||||||||||||||| |||||||| | ||| |||||||| | |||||||| ||||| |||| |||| |
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| T |
39800609 |
acctgaacaaaacaatcatgaaagaagagacgaagggtagcaggaacagtaacaaaagtttgttgaaatttc |
39800538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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