View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_32 (Length: 440)
Name: NF1125_low_32
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 87 - 411
Target Start/End: Complemental strand, 14746202 - 14745878
Alignment:
| Q |
87 |
aatatatattcagctggagccacataacctttcagagaggtgcttttctttctctaaatctaaatattcaagaactccaaaacttaaggtgttcttcttt |
186 |
Q |
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| T |
14746202 |
aatatatattcagctggagccacataaccttttagagaggtgcttttgtttctctaaatctaaatattcaagaattccaaaacttaaggtgttcttcttt |
14746103 |
T |
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| Q |
187 |
cttgtactttgttctctatttgttagtttctcactttctctaatgtaacaagtttgcctgtcatcatatgttaatgtcgagtttaagatagtatttatct |
286 |
Q |
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| T |
14746102 |
cttgtactttgttctctatttgttagtttctcactttctctaatgtaacaagtttgcctgtcatcatatgttaaggtcgagtttaagatagtatttatct |
14746003 |
T |
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| Q |
287 |
ctatatgctatggtatcctacttttctaattagtaatttgaaatttaatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggca |
386 |
Q |
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| T |
14746002 |
ctatatgatatggtatcctacttttctaattagtaatttgaaatttaatgcatatcttatgctaaatgatattgttttcacctgcagtgtcttaaaggca |
14745903 |
T |
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| Q |
387 |
tcgcagaaacctacattcaagaact |
411 |
Q |
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| T |
14745902 |
tcgcagaaacctacattcaagaact |
14745878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 71 - 207
Target Start/End: Complemental strand, 14743179 - 14743051
Alignment:
| Q |
71 |
atgatgttacttaataaatatatattcagctggagccacataacctttcagagaggtgcttttctttctctaaatctaaatattcaagaactccaaaact |
170 |
Q |
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| T |
14743179 |
atgatgttaattaataaatatttattcagcaggagcgacat---------gagaggtgcttttgtttctctaaatctaaatattcaaaatctccaaaact |
14743089 |
T |
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| Q |
171 |
taaggtg-ttcttctttcttgtactttgttctctattt |
207 |
Q |
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| T |
14743088 |
taaggtgtttcttatttcttgtactttgttctctattt |
14743051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 320 - 409
Target Start/End: Complemental strand, 14743038 - 14742946
Alignment:
| Q |
320 |
taatttgaaatttaatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggcatcgc---agaaacctacattcaagaa |
409 |
Q |
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| T |
14743038 |
taatttgaaatttaatacatatcttatgctaaatgatattgttttcgcctacagggtcttaaaggcattgcagaagaaacctacattcaagaa |
14742946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 233 - 401
Target Start/End: Original strand, 14289623 - 14289789
Alignment:
| Q |
233 |
aacaagtttgcctgtcatcatatgttaatgtcgagtttaagatagtatttatctctatatgctatggtatcctacttttctaattagtaatttgaaattt |
332 |
Q |
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| T |
14289623 |
aacaagtttggttgtcatcatatgttaatatggactt-aagacaatacttatctctatatgctacggtgtccttctttcctaatttgtaatttgaaattt |
14289721 |
T |
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| Q |
333 |
aatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggcatcgcagaaacctaca |
401 |
Q |
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| T |
14289722 |
aacaaatattgtacgctaagcgatattcttttca-attcagggtcttaaagtcattggagaaatctaca |
14289789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 234 - 303
Target Start/End: Complemental strand, 15056746 - 15056677
Alignment:
| Q |
234 |
acaagtttgcctgtcatcatatgttaatgtcgagtttaagatagtatttatctctatatgctatggtatc |
303 |
Q |
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| T |
15056746 |
acaagtttggctgtcatcatatgttagtatggagtttaagacaatttttatctctatatgctatggtatc |
15056677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 406
Target Start/End: Original strand, 15052323 - 15052411
Alignment:
| Q |
318 |
agtaatttgaaatttaatgcatatcgtatgctaaatgatattgttttcacctgcagggtcttaaaggcatcgcagaaacctacattcaa |
406 |
Q |
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| T |
15052323 |
agtaatttgaaatttaacacatattgtgtgctaaattatactgtttccacctacagggtcttaaatgcatgagagaaacctacattcaa |
15052411 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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