View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_33 (Length: 437)
Name: NF1125_low_33
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_33 |
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| [»] scaffold0352 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 248; Significance: 1e-137; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 54215009 - 54215321
Alignment:
| Q |
30 |
ataagttgttttgataatgaaaataaggtgaaaagaggttatgaagatgtgataagctgt-------------gtggaataagtgaatccaaacatgaac |
116 |
Q |
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| T |
54215009 |
ataagttgttttgataatgaaaataaggtgaaaagaggttatgaagatgtgataagctgttttgataagttgtgtggaataagtgaatccaaacatgaac |
54215108 |
T |
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| Q |
117 |
gagtatacctgatcaccagcaccgactatagcaagaagacttgaagtaaagagcatctcaacaatagagaaagctccaacatctacgtgaagaaataata |
216 |
Q |
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| T |
54215109 |
gagtatacctgatcaccagcaccgactatagcaagaagacttgaagtaaagagcatctcaacaatagagaaagctccaacatctacgtgaagaaataata |
54215208 |
T |
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| Q |
217 |
attaatattaattaggaggtgattaattatgaattatgatgagaaaattgtattgatacctctttgataacagagttttccagtattagtatcaaatatt |
316 |
Q |
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| T |
54215209 |
------attaattaggaggtgattaattatgaattatgatgagaaaattgtattgatacctctttgataacagagttttccagtattagtatcaaatatt |
54215302 |
T |
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| Q |
317 |
ttgaaaccatctgtggtgc |
335 |
Q |
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| T |
54215303 |
ttgaaaccatctttggtgc |
54215321 |
T |
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Target: scaffold0352 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0352
Description:
Target: scaffold0352; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Complemental strand, 16865 - 16829
Alignment:
| Q |
372 |
ctagactcaattaaataattcgaaacggacattacac |
408 |
Q |
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| T |
16865 |
ctagactcaattaaataattcgaaacgggcgttacac |
16829 |
T |
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