View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_34 (Length: 430)
Name: NF1125_low_34
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_34 |
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Alignment Details
Target: chr8 (Bit Score: 141; Significance: 9e-74; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 141; E-Value: 9e-74
Query Start/End: Original strand, 154 - 351
Target Start/End: Original strand, 13774858 - 13775052
Alignment:
| Q |
154 |
gaaggagaaaactcatgcatatcattaacaacggtgtccatacaaaaaagataatttaaatatcaaatccatcnnnnnnntaagaaactatagaacaaca |
253 |
Q |
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| T |
13774858 |
gaaggagaaaactcatgcatatcattaacaacggtgtccatacaaaaaagatgattaaaatatcggatccatcaaaaaa-taagaaacta--gaacaaca |
13774954 |
T |
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| Q |
254 |
accaataaagggtatcctcttaacaaaattaaaagatatacaagtcattttattagatcaaaactatgataaaaagttaatgtaatcctcataaaatg |
351 |
Q |
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| T |
13774955 |
accaataaagggtatcctcttaacaaaattaaaagatatacaagtcattttattggatcaaaactatgataaaaagttaatgtaatcctcataaaatg |
13775052 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 7 - 83
Target Start/End: Original strand, 13774711 - 13774787
Alignment:
| Q |
7 |
gcaccacagaacaaacgaaagaatagaaatgtttttcctattccttttctttaaagccacccttgttcccaagaggt |
83 |
Q |
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| T |
13774711 |
gcaccaccgaacaaatgaaagaatagaaatgtttttcctattcctttcctttaaagccacccttgttcccaagaggt |
13774787 |
T |
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