View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_36 (Length: 427)
Name: NF1125_low_36
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_36 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 13 - 399
Target Start/End: Original strand, 33950054 - 33950438
Alignment:
| Q |
13 |
aatatatacatgtatcttatttgaatatttcaaatttaataaatatgattagttttagataagtttcatgaatgattgtcaatattttaaaataataatg |
112 |
Q |
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| T |
33950054 |
aatatatacatgtatcttatttgaatatttcaaatttaataaatatgattagttttagataagtttcatgaatgatcgtcaatattttaaaataataatg |
33950153 |
T |
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| Q |
113 |
tcaaatacaatgtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatggcctactgaataatgc |
212 |
Q |
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| T |
33950154 |
tcaaatacaatgtacaatcgcggcgtaaaagaataaacaaaacatggtatgaattgtacatttgtttatttttatggtgaaatggcctactgaataatgc |
33950253 |
T |
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| Q |
213 |
cacacgttaacatnnnnnnnccaaattttaatgagtaagtaacacataaccaagtttgtttgtttctgacaaaacagcg-tccgaatatttaagtnnnnn |
311 |
Q |
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| T |
33950254 |
cacacgttaacataaaaaaaccatattttaacgagta---cacacattaccaagtttgtttctttcttacaaaacagcgttccgaatatttaagtaaaaa |
33950350 |
T |
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| Q |
312 |
nngacaaagaaaggaaagaataacgaagattagtacgtaatgtgccggaaagagacaaagaagaacacggtaccattccattcttgat |
399 |
Q |
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| T |
33950351 |
aagacaaagaaaggaaagaataacgaagattagtacgtaatgtgccggaaagagataaaaaagaacacggtaccattccattcttgat |
33950438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 326 - 396
Target Start/End: Complemental strand, 8279112 - 8279043
Alignment:
| Q |
326 |
aaagaataacgaagattagtacgtaatgtgccggaaagagacaaagaagaacacggtaccattccattctt |
396 |
Q |
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| T |
8279112 |
aaagaataacgaagattagtacgcaatgtgccggaaagaga-gaagaagaacacggtaccattcctttctt |
8279043 |
T |
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