View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_37 (Length: 427)

Name: NF1125_low_37
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_37
NF1125_low_37
[»] chr4 (24 HSPs)
chr4 (214-319)||(24486634-24486740)
chr4 (217-319)||(51806864-51806967)
chr4 (217-319)||(9930512-9930615)
chr4 (217-319)||(14595374-14595477)
chr4 (207-319)||(44808526-44808638)
chr4 (217-278)||(39485109-39485171)
chr4 (204-265)||(1731040-1731100)
chr4 (227-319)||(52802198-52802291)
chr4 (227-319)||(53140695-53140788)
chr4 (213-319)||(23349327-23349437)
chr4 (227-319)||(22247944-22248038)
chr4 (220-316)||(27790988-27791086)
chr4 (227-316)||(29405809-29405899)
chr4 (227-319)||(46080802-46080896)
chr4 (224-278)||(52013866-52013920)
chr4 (213-265)||(31713622-31713675)
chr4 (211-318)||(50981888-50981997)
chr4 (217-261)||(21297278-21297322)
chr4 (217-265)||(34459620-34459667)
chr4 (213-319)||(22829808-22829915)
chr4 (227-300)||(45097646-45097721)
chr4 (227-265)||(33733461-33733498)
chr4 (237-319)||(56445094-56445178)
chr4 (217-265)||(28928612-28928659)
[»] chr8 (15 HSPs)
chr8 (213-305)||(15961627-15961719)
chr8 (217-319)||(37226712-37226816)
chr8 (211-319)||(15542193-15542303)
chr8 (227-319)||(20216282-20216375)
chr8 (227-319)||(20235880-20235973)
chr8 (203-300)||(43511243-43511340)
chr8 (217-317)||(26561173-26561271)
chr8 (213-319)||(859563-859670)
chr8 (211-265)||(25500205-25500258)
chr8 (211-265)||(45553126-45553179)
chr8 (29-78)||(16007656-16007705)
chr8 (217-265)||(6109687-6109734)
chr8 (73-112)||(16007615-16007652)
chr8 (217-265)||(19643510-19643557)
chr8 (217-265)||(24891414-24891461)
[»] chr3 (28 HSPs)
chr3 (218-319)||(33118952-33119054)
chr3 (217-319)||(2012999-2013102)
chr3 (217-319)||(9162942-9163045)
chr3 (217-316)||(27064252-27064352)
chr3 (227-319)||(41410202-41410295)
chr3 (217-319)||(27346628-27346730)
chr3 (227-319)||(45079150-45079243)
chr3 (217-315)||(2150628-2150726)
chr3 (217-316)||(26787545-26787644)
chr3 (227-319)||(30247999-30248092)
chr3 (227-319)||(42096687-42096780)
chr3 (227-309)||(48583799-48583882)
chr3 (217-317)||(11671797-11671896)
chr3 (211-265)||(19873147-19873200)
chr3 (213-265)||(8340197-8340250)
chr3 (217-297)||(35203311-35203391)
chr3 (217-265)||(50622257-50622306)
chr3 (213-265)||(22845130-22845181)
chr3 (217-265)||(33558790-33558837)
chr3 (213-319)||(35688358-35688466)
chr3 (226-265)||(23298328-23298366)
chr3 (203-265)||(5041054-5041115)
chr3 (217-318)||(54444341-54444443)
chr3 (217-297)||(6408634-6408715)
chr3 (225-318)||(42881407-42881499)
chr3 (217-265)||(33099706-33099753)
chr3 (217-265)||(48080122-48080169)
chr3 (217-261)||(50508876-50508919)
[»] chr2 (15 HSPs)
chr2 (217-319)||(39767072-39767174)
chr2 (203-319)||(40475225-40475342)
chr2 (204-319)||(40507572-40507688)
chr2 (203-318)||(18974750-18974867)
chr2 (227-317)||(10391587-10391678)
chr2 (227-319)||(4289711-4289804)
chr2 (217-316)||(12757827-12757926)
chr2 (210-265)||(17154143-17154197)
chr2 (217-264)||(20937106-20937152)
chr2 (227-308)||(8753915-8753997)
chr2 (203-265)||(667967-668028)
chr2 (217-278)||(29155377-29155437)
chr2 (227-317)||(15234381-15234473)
chr2 (217-265)||(16711339-16711386)
chr2 (217-264)||(35005457-35005505)
[»] chr1 (32 HSPs)
chr1 (217-319)||(16177012-16177115)
chr1 (217-306)||(30489730-30489819)
chr1 (217-316)||(31873248-31873346)
chr1 (214-319)||(4052307-4052412)
chr1 (227-319)||(20415042-20415135)
chr1 (217-317)||(46772427-46772527)
chr1 (227-319)||(4893233-4893326)
chr1 (227-319)||(29185161-29185254)
chr1 (217-265)||(945544-945591)
chr1 (217-265)||(3821271-3821319)
chr1 (203-264)||(973559-973619)
chr1 (227-317)||(19996619-19996709)
chr1 (217-317)||(610774-610874)
chr1 (217-278)||(10786281-10786341)
chr1 (217-278)||(29512196-29512256)
chr1 (229-300)||(2465514-2465585)
chr1 (213-316)||(31646243-31646346)
chr1 (238-278)||(35659633-35659673)
chr1 (228-319)||(40044992-40045082)
chr1 (213-318)||(48662717-48662824)
chr1 (217-263)||(2975243-2975288)
chr1 (217-263)||(2978483-2978528)
chr1 (227-265)||(50099887-50099925)
chr1 (227-319)||(33362836-33362929)
chr1 (217-317)||(35978452-35978553)
chr1 (213-265)||(48985190-48985243)
chr1 (217-265)||(7842630-7842677)
chr1 (217-265)||(19506447-19506494)
chr1 (228-319)||(31107589-31107680)
chr1 (217-265)||(32835507-32835554)
chr1 (217-261)||(38491470-38491513)
chr1 (237-265)||(38491511-38491539)
[»] chr5 (23 HSPs)
chr5 (204-316)||(5657662-5657776)
chr5 (219-316)||(42030932-42031029)
chr5 (227-319)||(19254427-19254520)
chr5 (227-319)||(639301-639394)
chr5 (227-319)||(25694615-25694708)
chr5 (227-319)||(34718723-34718816)
chr5 (227-319)||(38309851-38309944)
chr5 (227-319)||(41692407-41692500)
chr5 (227-316)||(16186843-16186933)
chr5 (227-319)||(16620253-16620346)
chr5 (227-278)||(3049750-3049801)
chr5 (212-319)||(6311040-6311150)
chr5 (203-265)||(31149690-31149751)
chr5 (227-319)||(6277752-6277845)
chr5 (217-265)||(6224841-6224888)
chr5 (273-317)||(10937477-10937521)
chr5 (217-300)||(24489032-24489115)
chr5 (217-265)||(41983313-41983360)
chr5 (217-318)||(19549415-19549518)
chr5 (204-264)||(4572320-4572379)
chr5 (217-261)||(22632244-22632287)
chr5 (213-261)||(23141623-23141670)
chr5 (217-265)||(29455856-29455903)
[»] chr7 (24 HSPs)
chr7 (217-315)||(16278500-16278598)
chr7 (217-319)||(36074062-36074167)
chr7 (218-312)||(7376616-7376712)
chr7 (227-319)||(44300794-44300887)
chr7 (227-317)||(40789473-40789564)
chr7 (227-319)||(17172159-17172252)
chr7 (227-319)||(28067211-28067304)
chr7 (213-319)||(40342256-40342363)
chr7 (217-278)||(5924051-5924113)
chr7 (217-315)||(38398378-38398475)
chr7 (217-315)||(38400920-38401017)
chr7 (217-319)||(2960006-2960109)
chr7 (224-263)||(21153277-21153316)
chr7 (227-317)||(30391629-30391720)
chr7 (235-316)||(48644454-48644536)
chr7 (213-266)||(43394269-43394321)
chr7 (217-265)||(9477717-9477764)
chr7 (217-265)||(42284576-42284623)
chr7 (217-265)||(43702410-43702457)
chr7 (225-319)||(38469859-38469954)
chr7 (214-314)||(11244092-11244194)
chr7 (228-300)||(24430264-24430337)
chr7 (211-260)||(30738635-30738683)
chr7 (224-264)||(3363041-3363081)
[»] scaffold0005 (1 HSPs)
scaffold0005 (217-319)||(221901-222004)
[»] chr6 (5 HSPs)
chr6 (227-319)||(33960089-33960182)
chr6 (227-319)||(24447060-24447153)
chr6 (227-319)||(1221649-1221742)
chr6 (217-265)||(6938113-6938160)
chr6 (217-261)||(12429495-12429538)
[»] scaffold0938 (1 HSPs)
scaffold0938 (228-319)||(542-634)
[»] scaffold0062 (2 HSPs)
scaffold0062 (228-319)||(23818-23910)
scaffold0062 (228-319)||(33986-34078)
[»] scaffold0230 (1 HSPs)
scaffold0230 (229-319)||(26712-26803)
[»] scaffold0056 (1 HSPs)
scaffold0056 (228-319)||(72537-72626)
[»] scaffold0160 (1 HSPs)
scaffold0160 (213-319)||(26065-26173)
[»] scaffold0102 (1 HSPs)
scaffold0102 (217-261)||(16515-16559)
[»] scaffold0249 (1 HSPs)
scaffold0249 (213-261)||(20094-20142)


Alignment Details
Target: chr4 (Bit Score: 83; Significance: 4e-39; HSPs: 24)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 214 - 319
Target Start/End: Original strand, 24486634 - 24486740
Alignment:
Q  214 cattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagta 312  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| ||||||||| |||||||||||||||||||||||    
T  24486634 cattttaattataaaaagacaataaaaaacatcacaattgaaataaaactatgatttaattttttttaaagcaactcataaaatagtagaaatcatagta 24486733  T
Q  313 tttagcc 319  Q
    |||||||    
T  24486734 tttagcc 24486740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 51806967 - 51806864
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |||||| ||||||||| ||||||||||||||||| ||||||||    
T  51806967 tttaattataaaaagacaataaaaaacatcaccattgaaataaaactatgatccaatttttttaaaagcaactcataaaatagtagaaatcgtagtattt 51806868  T
Q  316 agcc 319  Q
    ||||    
T  51806867 agcc 51806864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 9930512 - 9930615
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| || | | |||||| ||||||||| ||||||||| ||||||| ||||||||    
T  9930512 tttaattataaaaagacaataaaaaacatcaccattgaaataaaactatgatctaattttttttaaagcaactcataaaatagcagaaatcttagtattt 9930611  T
Q  316 agcc 319  Q
    ||||    
T  9930612 agcc 9930615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 14595374 - 14595477
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||| || | | |||||| ||||||||| ||||||||| ||||||| ||||||||    
T  14595374 tttaattataaaacgacaataaaaaatatcaccattgaaataaaactatgatctaattttttttaaagcaactcataaaataggagaaatcgtagtattt 14595473  T
Q  316 agcc 319  Q
    ||||    
T  14595474 agcc 14595477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 207 - 319
Target Start/End: Original strand, 44808526 - 44808638
Alignment:
Q  207 ttgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttc-aaagcaactaataaaatagtagaaat 305  Q
    ||||||||| ||||||||||||||||||||||||| |||||||| | | |||||| ||| || || ||||||  ||||||||| ||||||||||||||||    
T  44808526 ttgtctgcactttaattataaaaagacaataaaaa-catcacaacttatataaaattatgatccatttttttttaaagcaactcataaaatagtagaaat 44808624  T
Q  306 catagtatttagcc 319  Q
    | ||||||||||||    
T  44808625 cgtagtatttagcc 44808638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 39485171 - 39485109
Alignment:
Q  217 tttaattataaaaagacaataaaaaa-catcacaattgaaataaaactattattcaatttttt 278  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  39485171 tttaattataaaaagacaataaaaaaacatcacaattgaaataaaactataatccaatttttt 39485109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 1731100 - 1731040
Alignment:
Q  204 ccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||||| ||| ||||||||| ||||||||||||||| |||||||||||||||||||||||    
T  1731100 ccattgtccgcactttaattatgaaaagacaataaaaa-catcacaattgaaataaaactat 1731040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 52802291 - 52802198
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  52802291 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 52802198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 53140695 - 53140788
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  53140695 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 53140788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 23349437 - 23349327
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaa---catcacaattgaaataaaactattattcaatt-ttttcaaagcaactaataaaatagtagaaatcat 308  Q
    ||||||||| ||| ||| ||||||||||||   || |||||||||||||||||||| ||||||   |||||||| ||||| |||||||||||  |||| |    
T  23349437 gcattttaactatgaaatgacaataaaaaaaaccaccacaattgaaataaaactatgattcaaaaattttcaaatcaactcataaaatagtatgaatcgt 23349338  T
Q  309 agtatttagcc 319  Q
    |||||||||||    
T  23349337 agtatttagcc 23349327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 22247944 - 22248038
Alignment:
Q  227 aaaagacaataaaa-aacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||| ||||||||||||||||||||||||| || | || || || ||| |||||||||||||| || ||||  ||||||||||||    
T  22247944 aaaagacaataaaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacaaattgtagtatttagcc 22248038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 220 - 316
Target Start/End: Complemental strand, 27791086 - 27790988
Alignment:
Q  220 aattataaaaagacaataaaaaa-catcacaattgaaataaaactattattca-attttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    ||||||||||| ||||||||||| || |||||||||||||||| ||| || || ||||||||| | ||||| |||||||||||  |||| |||||||||    
T  27791086 aattataaaaaaacaataaaaaagcaccacaattgaaataaaattataatccagattttttcatatcaactcataaaatagtacgaatcgtagtattta 27790988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 316
Target Start/End: Complemental strand, 29405899 - 29405809
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    ||||||||| |||||| |||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| |||||||||    
T  29405899 aaaagacaaaaaaaaatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtattta 29405809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 46080802 - 46080896
Alignment:
Q  227 aaaagacaataaaa-aacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||| ||||||||||||||||||||||||| || | || || || ||| ||| | |||||||||||  |||||||||||||||||    
T  46080802 aaaagacaataaaaaaacatcacaattgaaataaaactatgatataaaattatttaaatcaattgataaaatagtacgaatcatagtatttagcc 46080896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 224 - 278
Target Start/End: Original strand, 52013866 - 52013920
Alignment:
Q  224 ataaaaagacaataaaaaacatcacaattgaaataaaactattattcaatttttt 278  Q
    |||||| || ||||||||||| |||||||||||||||||||| || |||||||||    
T  52013866 ataaaatgataataaaaaacaccacaattgaaataaaactatgatccaatttttt 52013920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 31713675 - 31713622
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaaca-tcacaattgaaataaaactat 265  Q
    ||||||||||||| |||||||||||||||| |  ||||||||||||||||||||    
T  31713675 gcattttaattatgaaaagacaataaaaaaaacccacaattgaaataaaactat 31713622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 50981997 - 50981888
Alignment:
Q  211 ctgcattttaattataaaaagacaataaaaaacatcacaattg-aaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcat 308  Q
    ||||| ||||| |||||||||||||| ||| | |||||||||| ||||||||||||  |  ||| ||||||||| ||||| ||||||||||   ||||||    
T  50981997 ctgcactttaactataaaaagacaatcaaatatatcacaattgaaaataaaactatggtcccaaatttttcaaatcaactcataaaatagtttgaatcat 50981898  T
Q  309 agtatttagc 318  Q
    | ||||||||    
T  50981897 aatatttagc 50981888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 21297322 - 21297278
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||| ||| ||||||||||||||||||||| |||||||||||||    
T  21297322 tttaactatgaaaagacaataaaaaacatcataattgaaataaaa 21297278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 34459667 - 34459620
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  34459667 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaactat 34459620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 22829808 - 22829915
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagt 311  Q
    ||||||||| ||| |||| |||||||||||   |||||||||||||||||||| || | ||   ||||||| ||||| |||||||| ||  |||| ||||    
T  22829808 gcattttaactatgaaaaaacaataaaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataatatgaatcgtagt 22829907  T
Q  312 atttagcc 319  Q
    ||||||||    
T  22829908 atttagcc 22829915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 227 - 300
Target Start/End: Original strand, 45097646 - 45097721
Alignment:
Q  227 aaaagacaataaaa-aacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagta 300  Q
    |||||||||||||| |||||||||||| |||||||||||| || | || || || ||| |||||||||||||||||    
T  45097646 aaaagacaataaaaaaacatcacaattaaaataaaactatgatccaaaattatttaaatcaactaataaaatagta 45097721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 33733461 - 33733498
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  33733461 aaaagacaataaaaaacatcacaattg-aataaaactat 33733498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 319
Target Start/End: Complemental strand, 56445178 - 56445094
Alignment:
Q  237 aaaaaacatcacaattgaaataaaactattattcaa--ttttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||| |||||||||||||||||||| || |||  |||||| ||| ||||| | |||||| ||  |||| ||||||||||||    
T  56445178 aaaaaacaccacaattgaaataaaactatgatccaaatttttttaaaatcaactcacaaaataatatgaatcgtagtatttagcc 56445094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 28928659 - 28928612
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| ||| |||||||||||||||||||    
T  28928659 tttaactatgaaaagacaataaaaa-cattacaattgaaataaaactat 28928612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 77; Significance: 1e-35; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 213 - 305
Target Start/End: Complemental strand, 15961719 - 15961627
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaat 305  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||| | ||||||||||||||||||||||||||||||||||    
T  15961719 gcattttaattataaaaagacaataaaaaacatcacaattaaaataaaactactatcctattttttcaaagcaactaataaaatagtagaaat 15961627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 37226816 - 37226712
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa--ttttttcaaagcaactaataaaatagtagaaatcatagtatt 314  Q
    |||||||| ||||||||||||||||||||||| ||||||||||||||||||| |||  |||||| |||  |||| |||||||||||||||||||||||||    
T  37226816 tttaattacaaaaagacaataaaaaacatcacgattgaaataaaactattatccaatttttttttaaaataactcataaaatagtagaaatcatagtatt 37226717  T
Q  315 tagcc 319  Q
    |||||    
T  37226716 tagcc 37226712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 211 - 319
Target Start/End: Original strand, 15542193 - 15542303
Alignment:
Q  211 ctgcattttaattataaaaagacaataaaaaa-catcacaattgaaataaaactattattcaattttttcaaa-gcaactaataaaatagtagaaatcat 308  Q
    ||||| ||||||||||||||| |||||||||| |||||||||| |||||||||||  || ||||||||| ||| |||||| ||||||||||||||||  |    
T  15542193 ctgcactttaattataaaaaggcaataaaaaaacatcacaattaaaataaaactaagatccaatttttttaaaagcaactcataaaatagtagaaattgt 15542292  T
Q  309 agtatttagcc 319  Q
    |||||||||||    
T  15542293 agtatttagcc 15542303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 20216282 - 20216375
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  20216282 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 20216375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 20235880 - 20235973
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  20235880 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 20235973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 203 - 300
Target Start/End: Original strand, 43511243 - 43511340
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagta 300  Q
    |||||| |||||| ||||| ||| |||||||||| ||||| || ||||||||||||||| |||  ||| |||||||||||| ||||| |||||||||||    
T  43511243 cccattatctgcactttaactatgaaaagacaat-aaaaatataacaattgaaataaaattatggttcaaattttttcaaatcaactcataaaatagta 43511340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 26561271 - 26561173
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    ||||| ||| ||||||||||||||| |||||||||||| ||||||||||  | ||||||||| |||  |||| ||||||||||| ||||| || ||||||    
T  26561271 tttaactatgaaaagacaataaaaa-catcacaattgatataaaactatggtccaatttttt-aaattaactcataaaatagtacaaatcgtaatattta 26561174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 859563 - 859670
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagt 311  Q
    ||||||||| ||| ||||||||| |||||| | |||||||||||||||||||| || | ||   ||||||| ||||| |||||||| ||  |||| ||||    
T  859563 gcattttaactatgaaaagacaaaaaaaaaaaccacaattgaaataaaactatgatccaaaaaatttcaaatcaacttataaaataatatgaatcgtagt 859662  T
Q  312 atttagcc 319  Q
    ||||||||    
T  859663 atttagcc 859670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 25500205 - 25500258
Alignment:
Q  211 ctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  25500205 ctgcactttaaatatgaaaagacaataaaa-acatcacaattgaaataaaactat 25500258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 45553126 - 45553179
Alignment:
Q  211 ctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||||    
T  45553126 ctgcattttaactatgaaaagacaa-aaagaacatcacaattgaaataaaactat 45553179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 78
Target Start/End: Complemental strand, 16007705 - 16007656
Alignment:
Q  29 acaaaaaccagtagaatgagggcctggacatagatcgcattgcatcacct 78  Q
    ||||||||||||| |||||||||||| |||||| || || ||||||||||    
T  16007705 acaaaaaccagtacaatgagggcctgaacatagctctcagtgcatcacct 16007656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 6109687 - 6109734
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  6109687 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 6109734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 73 - 112
Target Start/End: Complemental strand, 16007652 - 16007615
Alignment:
Q  73 tcaccttttcctcatttataaggtgacaaagtttaggtat 112  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  16007652 tcaccttttcctcattta--aggtgacaaagtttaggtat 16007615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 19643557 - 19643510
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| |||||||||||||| ||||||||    
T  19643557 tttaactatgaaaagacaataaaaa-catcacaattgaaaaaaaactat 19643510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 24891461 - 24891414
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  24891461 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 24891414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 71; Significance: 5e-32; HSPs: 28)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 218 - 319
Target Start/End: Original strand, 33118952 - 33119054
Alignment:
Q  218 ttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| |||||||||  ||||||||||||||||||| ||||||    
T  33118952 ttaattataaaaagacaataaaaaacatcacaattgaaataaaactatgatccaattttttttaaagcaactcgtaaaatagtagaaatcataatattta 33119051  T
Q  317 gcc 319  Q
    |||    
T  33119052 gcc 33119054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 2013102 - 2012999
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| || ||| |||||| ||||||||| ||||||||||||||||| |||||||     
T  2013102 tttaattataaaaagacaataaaaaatatcacaattgaaataaaactatgatccaattttttttaaagcaactcataaaatagtagaaatcgtagtatta 2013003  T
Q  316 agcc 319  Q
    ||||    
T  2013002 agcc 2012999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 9163045 - 9162942
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| || ||| |||||| ||||| ||| ||||||||||||||||| ||||||||    
T  9163045 tttaattataaaaagacaataaaaaacatcacaattaaaataaaactatgatccaattttttttaaagctactcataaaatagtagaaatcgtagtattt 9162946  T
Q  316 agcc 319  Q
    ||||    
T  9162945 agcc 9162942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 27064252 - 27064352
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattca-attttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||||| || ||  |||||| ||||||||| ||||||||| |||||||  |||||||    
T  27064252 tttaattataaaaaggcaataaaaaacatcaccattgaaataaaactatgatccatttttttttaaagcaactcataaaatagcagaaatcgaagtattt 27064351  T
Q  316 a 316  Q
    |    
T  27064352 a 27064352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 41410295 - 41410202
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  41410295 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtatgaatcgtagtatttagcc 41410202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 27346628 - 27346730
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    |||||| || |||||||||||||||||| |||||||||||||||| ||| ||  ||    |||||| ||||||||||||||||| ||||| |||||||||    
T  27346628 tttaatcatgaaaagacaataaaaaacaccacaattgaaataaaattatgataaaaaaaattcaaatcaactaataaaatagtataaatcgtagtattta 27346727  T
Q  317 gcc 319  Q
    |||    
T  27346728 gcc 27346730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 45079243 - 45079150
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||| ||||||||||||    
T  45079243 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatatgaatcgtagtatttagcc 45079150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 2150726 - 2150628
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||||||  | | ||| |||||||| ||||| |||||||||||  |||| ||||||||    
T  2150726 tttaattatgaaaagacaataaaaa-catcacaattgaaataaaactatggtctaaatattttcaaatcaactcataaaatagtacgaatcgtagtattt 2150628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 26787644 - 26787545
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa--ttttttcaaagcaactaataaaatagtagaaatcatagtatt 314  Q
    ||||||||||||| ||||||||||| |||||| |||||||||||||||| || |||  |||||| ||| ||||| ||||||||| ||||||| |||||||    
T  26787644 tttaattataaaa-gacaataaaaa-catcaccattgaaataaaactatgatccaatttttttttaaatcaactcataaaatagcagaaatcgtagtatt 26787547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 30248092 - 30247999
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||| || |||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  30248092 aaaagacaataaataatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 30247999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 42096780 - 42096687
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| || ||||||||||||||  |||| || |||||||||    
T  42096780 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcatctaataaaatagtacgaatcgtaatatttagcc 42096687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 309
Target Start/End: Original strand, 48583799 - 48583882
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattat--tcaattttttcaaagcaactaataaaatagtagaaatcata 309  Q
    |||||||||||||||||| |||||||||||||||| ||| ||  ||||   ||||||| ||||||||||||||||| ||||||||    
T  48583799 aaaagacaataaaaaacaccacaattgaaataaaattatgatcctcaa-aatttcaaatcaactaataaaatagtataaatcata 48583882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 11671797 - 11671896
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||  |  ||| |||| |||  |||| |||||||| ||  ||||||||||||||    
T  11671797 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaactatggtcaaatattttaaaattaactcataaaataatacgaatcatagtattta 11671895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 265
Target Start/End: Original strand, 19873147 - 19873200
Alignment:
Q  211 ctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  19873147 ctgcactttaactatgaaaagacaataaaa-acatcacaattgaaataaaactat 19873200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 8340197 - 8340250
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaa-catcacaattgaaataaaactat 265  Q
    ||||||||| ||| |||||||||||||||| || ||||||||||||||||||||    
T  8340197 gcattttaactatgaaaagacaataaaaaaccaccacaattgaaataaaactat 8340250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 35203311 - 35203391
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaata 297  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||  ||| |||||||||||| |||||  |||||||    
T  35203311 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactatggttcaaattttttcaaatcaactcgtaaaata 35203391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 50622306 - 50622257
Alignment:
Q  217 tttaattataaaaagacaataaaaaa-catcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||| |||||||||||||||||||||||    
T  50622306 tttaactatgaaaagacaataaaaaaacatcacaattgaaataaaactat 50622257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 265
Target Start/End: Complemental strand, 22845181 - 22845130
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||||||| ||| ||||||||||||||| ||||||| |||||||||||||||    
T  22845181 gcattttaactatgaaaagacaataaaaa-catcacatttgaaataaaactat 22845130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 33558837 - 33558790
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  33558837 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaactat 33558790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 319
Target Start/End: Original strand, 35688358 - 35688466
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaaca-tcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatag 310  Q
    ||||||||| ||| |||||||||||||||| |  |||||||||||||||||||| || | ||   ||||||| ||||| |||||||| ||  |||| |||    
T  35688358 gcattttaactatgaaaagacaataaaaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataatatgaatcgtag 35688457  T
Q  311 tatttagcc 319  Q
    |||||||||    
T  35688458 tatttagcc 35688466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 23298366 - 23298328
Alignment:
Q  226 aaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||||||||||||| |||||||||||||||||||||||    
T  23298366 aaaaagacaataaaaa-catcacaattgaaataaaactat 23298328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 5041115 - 5041054
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||| || ||| ||||| ||| |||||| |||||||| |||||||||||||||||||||||    
T  5041115 cccattatccgcactttaactatgaaaagataataaaaa-catcacaattgaaataaaactat 5041054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 318
Target Start/End: Complemental strand, 54444443 - 54444341
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||| ||| |||||||||||||||| || || ||||||||||||||||  | |||   |||||||| ||||| |||||||||||  |||| || |||||    
T  54444443 tttaactatgaaaagacaataaaaaatattacgattgaaataaaactatggtccaagaattttcaaatcaactcataaaatagtatgaatcgtattattt 54444344  T
Q  316 agc 318  Q
    |||    
T  54444343 agc 54444341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 297
Target Start/End: Original strand, 6408634 - 6408715
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaata 297  Q
    ||||| ||| |||| |||| |||||||||||||| |||||||||||||  ||  ||||||||| |||  |||||||||||||    
T  6408634 tttaactatgaaaaaacaaaaaaaaacatcacaaatgaaataaaactacgatcccaattttttaaaattaactaataaaata 6408715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 318
Target Start/End: Original strand, 42881407 - 42881499
Alignment:
Q  225 taaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtatttagc 318  Q
    ||||| |||||||||| ||||||||||||||||||||||||  |  ||    |||||| ||||| ||||||||||| | ||| |||||||||||    
T  42881407 taaaaggacaataaaa-acatcacaattgaaataaaactatggtcaaaaaaattcaaatcaactcataaaatagtacacatcgtagtatttagc 42881499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 33099706 - 33099753
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  33099706 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 33099753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 48080122 - 48080169
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  48080122 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 48080169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 50508919 - 50508876
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  50508919 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaa 50508876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 71; Significance: 5e-32; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 39767174 - 39767072
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    |||||||||||||| ||||||||||| ||| |||||||||||||||||| || ||||||||| ||||||||| ||||||||||||||||| |||||||||    
T  39767174 tttaattataaaaatacaataaaaaatatcgcaattgaaataaaactatgatccaatttttttaaagcaactcataaaatagtagaaatcgtagtattta 39767075  T
Q  317 gcc 319  Q
    |||    
T  39767074 gcc 39767072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 203 - 319
Target Start/End: Complemental strand, 40475342 - 40475225
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtag 301  Q
    |||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||  || || | |||||||| ||| ||||| |||||| ||||     
T  40475342 cccattatctgcactttaattataaaaagacaataaaaaatatcacaattgaaataaaatcatgatccaaatttttttaaaacaacttataaaacagtaa 40475243  T
Q  302 aaatcatagtatttagcc 319  Q
    | ||| ||||||| ||||    
T  40475242 atatcttagtattaagcc 40475225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 204 - 319
Target Start/End: Complemental strand, 40507688 - 40507572
Alignment:
Q  204 ccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtaga 302  Q
    ||||| |||||| |||||||||||||||||||||||||| ||||||||||||||||||  || || ||| |||||| ||| ||||| |||||| |||| |    
T  40507688 ccattatctgcactttaattataaaaagacaataaaaaatatcacaattgaaataaaatcatgatccaattttttttaaaacaacttataaaacagtaaa 40507589  T
Q  303 aatcatagtatttagcc 319  Q
     ||| ||||||| ||||    
T  40507588 tatcgtagtattaagcc 40507572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 203 - 318
Target Start/End: Original strand, 18974750 - 18974867
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaaca-tcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagta 300  Q
    |||||| || ||||||||||||| |||||||||||||||| |  |||||||||||||||||||| || | ||   ||||||| ||||| |||||||| ||    
T  18974750 cccattatccgcattttaattatgaaaagacaataaaaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataata 18974849  T
Q  301 gaaatcatagtatttagc 318  Q
      ||||||||||||||||    
T  18974850 tgaatcatagtatttagc 18974867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 10391678 - 10391587
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttag 317  Q
    ||||||||||||||||||||||||||||||||||||||  || | || || || ||| |||||||||||||| ||  |||| ||||||||||    
T  10391678 aaaagacaataaaaaacatcacaattgaaataaaactaggatccaaaattatttaaatcaactaataaaataatatgaatcgtagtatttag 10391587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 4289711 - 4289804
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||||| |||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  4289711 aaaagacaataaaaaatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 4289804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 217 - 316
Target Start/End: Original strand, 12757827 - 12757926
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||| |||||||||| ||||| ||||||| ||||||||||||||  || || |||||||||| || || |||||||||||  |||| ||||||||    
T  12757827 tttaattatgaaaagacaat-aaaaatatcacaaatgaaataaaactatggttaaatttttttcaaatcagctcataaaatagtaagaatcgtagtattt 12757925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 210 - 265
Target Start/End: Complemental strand, 17154197 - 17154143
Alignment:
Q  210 tctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||||||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  17154197 tctgcattttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 17154143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 264
Target Start/End: Original strand, 20937106 - 20937152
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaacta 264  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  20937106 tttaattatgaaaagacaataaaa-acatcacaattgaaataaaacta 20937152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Original strand, 8753915 - 8753997
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcat 308  Q
    |||||||||||||||||| |||||||||||||||| ||| || |  |   ||||||| ||||||||||||||||| |||||||    
T  8753915 aaaagacaataaaaaacaccacaattgaaataaaattatgatccgcaaaatttcaaatcaactaataaaatagtataaatcat 8753997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 668028 - 667967
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||| || ||| ||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  668028 cccattatccgcactttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 667967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 29155377 - 29155437
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaatttttt 278  Q
    ||||| ||| |||||||| ||||| ||||||||||||||||||||||||  | |||||||||    
T  29155377 tttaactatgaaaagacattaaaa-acatcacaattgaaataaaactatggtccaatttttt 29155437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 15234381 - 15234473
Alignment:
Q  227 aaaagacaataaaaaa-catcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttag 317  Q
    |||||| ||||||||| |||||||||||||| |||||||| || | || || |||||| |||||  |||||| ||| ||||| ||||||||||    
T  15234381 aaaagaaaataaaaaatcatcacaattgaaacaaaactatgatccaaaattattcaaatcaactcttaaaatcgtacaaatcgtagtatttag 15234473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 16711386 - 16711339
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| ||||| |||||||||||||||||    
T  16711386 tttaaatatgaaaagacaataaaaa-catcataattgaaataaaactat 16711339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 264
Target Start/End: Complemental strand, 35005505 - 35005457
Alignment:
Q  217 tttaattataaaaagacaataaa-aaacatcacaattgaaataaaacta 264  Q
    ||||| ||| ||||||||||||| ||||| |||||||||||||||||||    
T  35005505 tttaaatatgaaaagacaataaacaaacaccacaattgaaataaaacta 35005457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 8e-28; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 16177115 - 16177012
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| || ||| |||||| ||| ||||| ||||||||| ||||||| ||||||||    
T  16177115 tttaattataaaaagacaataaaaaacatcaccattgaaataaaactatgatccaattttttttaaatcaactcataaaatagcagaaatcgtagtattt 16177016  T
Q  316 agcc 319  Q
    ||||    
T  16177015 agcc 16177012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 306
Target Start/End: Original strand, 30489730 - 30489819
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatc 306  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||||||| || || |||||| ||||||||| |||||||||||||||||    
T  30489730 tttaattataaaaagtcaataaaaaacatcataattgaaataaaactatgatccattttttttaaagcaactcataaaatagtagaaatc 30489819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 217 - 316
Target Start/End: Complemental strand, 31873346 - 31873248
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| || ||||||||||||  |||||||||| ||||||||    
T  31873346 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactatgatccaattttttttaatgcaactaataaa--agtagaaatcgtagtattt 31873249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 214 - 319
Target Start/End: Complemental strand, 4052412 - 4052307
Alignment:
Q  214 cattttaattataaaaagacaataaaaaa-catcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagta 312  Q
    ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||| || ||||||||| ||| |||||  |||||||||||||||| |||||    
T  4052412 cattttaattataaaaaaacaataaaaaaacatcaca-ttgaaataaaactatgatccaatttttttaaaccaactcgtaaaatagtagaaatcttagta 4052314  T
Q  313 tttagcc 319  Q
    |||||||    
T  4052313 tttagcc 4052307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 20415042 - 20415135
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  20415042 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 20415135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 46772527 - 46772427
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaatt-ttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||||||| || ||||||||| ||||||||||||||||||||||  ||||||| |||| ||| ||||| ||||||||||| ||||| ||||||||    
T  46772527 tttaattataaaa-gataataaaaaatatcacaattgaaataaaactatgtttcaattttttttaaaacaactcataaaatagtaaaaatcgtagtattt 46772429  T
Q  316 ag 317  Q
    ||    
T  46772428 ag 46772427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 4893326 - 4893233
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  4893326 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 4893233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 29185161 - 29185254
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  29185161 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 29185254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 945544 - 945591
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  945544 tttaattataaaaagacaataaaa-acatcacaattgaaataaaactat 945591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 3821319 - 3821271
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||||||||||||||||||||||||||    
T  3821319 tttaactatgaaaagacaataaaaaacatcacaattgaaataaaactat 3821271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 203 - 264
Target Start/End: Original strand, 973559 - 973619
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaacta 264  Q
    |||||| || ||| ||||||||| |||||||||||||| |||||||||||||||||||||||    
T  973559 cccattatccgcactttaattatgaaaagacaataaaa-acatcacaattgaaataaaacta 973619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 19996709 - 19996619
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtatttag 317  Q
    ||||||||||||||| ||||||||||||||||||||||| || | ||| |||| |||  |||| |||||||| || ||||| ||||||||||    
T  19996709 aaaagacaataaaaa-catcacaattgaaataaaactatgatctaaatcttttaaaattaactcataaaataatacaaatcgtagtatttag 19996619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 317
Target Start/End: Original strand, 610774 - 610874
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||| ||| |||||||||||||| |||||||||||||||||||| |||  | | |||||||| |||  |||| |||||| |||| ||||| ||||||||    
T  610774 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaattatggtccaaattttttaaaattaactcataaaagagtacaaatcgtagtattt 610872  T
Q  316 ag 317  Q
    ||    
T  610873 ag 610874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 278
Target Start/End: Original strand, 10786281 - 10786341
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaatttttt 278  Q
    ||||||||| |||||||||||||||  ||||||||||||||||||||||  || ||||||||    
T  10786281 tttaattatgaaaagacaataaaaat-atcacaattgaaataaaactatggtttaatttttt 10786341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 29512256 - 29512196
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaatttttt 278  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||  | |||||||||    
T  29512256 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaactatggtccaatttttt 29512196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 300
Target Start/End: Complemental strand, 2465585 - 2465514
Alignment:
Q  229 aagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagta 300  Q
    |||||||||||||  ||||||||| ||||||||||||  ||||| |||||||||| ||||| |||||||||||    
T  2465585 aagacaataaaaat-atcacaattaaaataaaactatggttcaaattttttcaaatcaactcataaaatagta 2465514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 316
Target Start/End: Complemental strand, 31646346 - 31646243
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagt 311  Q
    ||||||||| ||| ||||||||| |||||||  |||||||||||||||||||| || | ||   ||||||| ||||| |||||||| ||  |||||||||    
T  31646346 gcattttaactatgaaaagacaacaaaaaacc-cacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataatatgaatcatagt 31646248  T
Q  312 attta 316  Q
    |||||    
T  31646247 attta 31646243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 278
Target Start/End: Original strand, 35659633 - 35659673
Alignment:
Q  238 aaaaacatcacaattgaaataaaactattattcaatttttt 278  Q
    |||||||||||||||||||||||||||| || |||||||||    
T  35659633 aaaaacatcacaattgaaataaaactatgatccaatttttt 35659673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 40044992 - 40045082
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||| |||||||||||| |||||||||||  |  | |||||| ||| ||||| |||||||||||  |||| ||| ||||||||    
T  40044992 aaagacaataaaa-acatcacaattgtaataaaactatggtcaattttttttaaatcaactcataaaatagtatgaatcgtagaatttagcc 40045082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 213 - 318
Target Start/End: Original strand, 48662717 - 48662824
Alignment:
Q  213 gcattttaattataaaaagacaataa-aaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatag 310  Q
    ||||||||||||| |||||||||||| ||||   |||||||||||||||| |||||| | ||   ||||||| ||||| |||||||| ||  |||| |||    
T  48662717 gcattttaattatgaaaagacaataataaaaacccacaattgaaataaaattattatccaaaaaatttcaaatcaactcataaaataatatgaatcgtag 48662816  T
Q  311 tatttagc 318  Q
    ||||||||    
T  48662817 tatttagc 48662824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Complemental strand, 2975288 - 2975243
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaact 263  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||    
T  2975288 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaact 2975243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 263
Target Start/End: Original strand, 2978483 - 2978528
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaact 263  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  2978483 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaact 2978528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 50099887 - 50099925
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||| ||||||||||| ||||||||||||||||||||    
T  50099887 aaaagataataaaaaacaccacaattgaaataaaactat 50099925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 33362929 - 33362836
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||||| ||||||||  |||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  33362929 aaaagacaataaaaaatatcacaatataaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 33362836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 317
Target Start/End: Complemental strand, 35978553 - 35978452
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||| |||||||| |||| |||| ||||||||| ||| |||||||||  || |||||||||| |||  |||| |||||||||||  |||| | ||||||    
T  35978553 tttaaatataaaaaaacaaaaaaacacatcacaaatgatataaaactacgatctcaattttttaaaattaactcataaaatagtatgaatcgtggtattt 35978454  T
Q  316 ag 317  Q
    ||    
T  35978453 ag 35978452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 265
Target Start/End: Original strand, 48985190 - 48985243
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaac-atcacaattgaaataaaactat 265  Q
    ||||||||| | | ||||||||||||||||  ||||||||||||||||||||||    
T  48985190 gcattttaactgtgaaaagacaataaaaaaatatcacaattgaaataaaactat 48985243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 7842630 - 7842677
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||| |||||||| |||||||||||||||    
T  7842630 tttaactatgaaaagacaataaaa-acatcacacttgaaataaaactat 7842677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 19506447 - 19506494
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||| ||||||| ||||||||||||||||||||||||    
T  19506447 tttaactatgaaaagataataaaa-acatcacaattgaaataaaactat 19506494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 31107680 - 31107589
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattcaa-ttttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||  ||||||||| |||||||| |||  | ||| |||||||||| ||| | ||||||||||| ||||| || |||||||||    
T  31107680 aaagacaataaaaat-atcacaattaaaataaaattatggtccaaattttttcaaatcaagtcataaaatagtacaaatcttattatttagcc 31107589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 32835554 - 32835507
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||    
T  32835554 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactat 32835507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 38491470 - 38491513
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  38491470 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaa 38491513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 237 - 265
Target Start/End: Original strand, 38491511 - 38491539
Alignment:
Q  237 aaaaaacatcacaattgaaataaaactat 265  Q
    |||||||||||||||||||||||||||||    
T  38491511 aaaaaacatcacaattgaaataaaactat 38491539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 204 - 316
Target Start/End: Complemental strand, 5657776 - 5657662
Alignment:
Q  204 ccattgtctgcattttaattataaaaagacaataaaaaa-catcacaattgaaataaaactattattcaattttttc-aaagcaactaataaaatagtag 301  Q
    ||||| || ||| |||||||||||||||||||||||||| |||||| |||||||||||||||| || |||||||||  ||||||||| ||||||||||||    
T  5657776 ccattatccgcactttaattataaaaagacaataaaaaaacatcactattgaaataaaactatgatccaattttttttaaagcaactcataaaatagtag 5657677  T
Q  302 aaatcatagtattta 316  Q
    ||||| |||||||||    
T  5657676 aaatcgtagtattta 5657662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 219 - 316
Target Start/End: Original strand, 42030932 - 42031029
Alignment:
Q  219 taattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    |||||||||||||||||||||||| || ||||||||||||||||||| || || |||||| ||||||| | ||||||||||||||||| |||||||||    
T  42030932 taattataaaaagacaataaaaaatattacaattgaaataaaactatgatccattttttttaaagcaattcataaaatagtagaaatcgtagtattta 42031029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 19254520 - 19254427
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  19254520 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtatgaatcgtagtatttagcc 19254427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 639394 - 639301
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattcaattt-tttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||| ||||||||||| |||||||||||||||| ||| || |||    ||||||| ||||||||||||||||| ||||| ||||||||||||    
T  639394 aaaagaaaataaaaaacaccacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagcc 639301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 25694708 - 25694615
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||| | | || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  25694708 aaaagacaataaaaaacatcacaattgaaataaaattgtgatctaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 25694615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 34718816 - 34718723
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  34718816 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 34718723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 38309851 - 38309944
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||| ||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| || |||||||||    
T  38309851 aaaagacaacaaaaaacatcacaattgaaataaaactatgatccgaaattatttaaatcaactaataaaatagtacgaatcgtaatatttagcc 38309944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 41692500 - 41692407
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  41692500 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 41692407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 227 - 316
Target Start/End: Original strand, 16186843 - 16186933
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattcaattt-tttcaaagcaactaataaaatagtagaaatcatagtattta 316  Q
    |||||||||||||||||| || ||||||||||||| ||| || |||    ||||||| ||||||||||||||||| ||||| |||||||||    
T  16186843 aaaagacaataaaaaacaccataattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtattta 16186933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 16620346 - 16620253
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||| ||||||||||||||||||||||| || | ||   ||| ||| |||||| ||||||||||  |||||| ||||||||||    
T  16620346 aaaagacaataaaaagcatcacaattgaaataaaactatgatccaaaaaattttaaatcaactagtaaaatagtacgaatcatcgtatttagcc 16620253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 278
Target Start/End: Complemental strand, 3049801 - 3049750
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattcaatttttt 278  Q
    |||||| ||||||||||| |||||||||||||||||||| |||||| |||||    
T  3049801 aaaagataataaaaaacaccacaattgaaataaaactatgattcaaattttt 3049750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 212 - 319
Target Start/End: Original strand, 6311040 - 6311150
Alignment:
Q  212 tgcattttaattataaaaagacaataaaa--aacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcat 308  Q
    |||| ||||| ||| ||||||||||||||  ||||||||||||||||||||| ||| || | | |||||| ||| ||||| |||||||||||  |||  |    
T  6311040 tgcactttaactatgaaaagacaataaaaaaaacatcacaattgaaataaaaatatgatctaattttttttaaatcaactcataaaatagtacgaattgt 6311139  T
Q  309 agtatttagcc 319  Q
    |||||||||||    
T  6311140 agtatttagcc 6311150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 203 - 265
Target Start/End: Complemental strand, 31149751 - 31149690
Alignment:
Q  203 cccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    |||||| || ||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  31149751 cccattatccgcactttaactatgaaaagacaataaaaa-catcacaattgaaataaaactat 31149690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 6277845 - 6277752
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||| ||||||| ||||||||||||||||||| || | || || || ||| || ||||||||||||||  |||| || |||||||||    
T  6277845 aaaagacaatataaaacattacaattgaaataaaactatgatccaaaattatttaaatcatctaataaaatagtacgaatcgtaatatttagcc 6277752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 6224888 - 6224841
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  6224888 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaactat 6224841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 273 - 317
Target Start/End: Original strand, 10937477 - 10937521
Alignment:
Q  273 ttttttcaaagcaactaataaaatagtagaaatcatagtatttag 317  Q
    |||||| ||||||||| ||||||||||||||||| ||||||||||    
T  10937477 tttttttaaagcaactcataaaatagtagaaatcgtagtatttag 10937521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 300
Target Start/End: Complemental strand, 24489115 - 24489032
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagta 300  Q
    ||||| ||| |||||||||||||||  ||||||||||||||||||||||  ||| ||  |||||||| ||||| |||||||||||    
T  24489115 tttaactatgaaaagacaataaaaat-atcacaattgaaataaaactatggttcaaaaattttcaaatcaactcataaaatagta 24489032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 41983313 - 41983360
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  41983313 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaactat 41983360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 318
Target Start/End: Original strand, 19549415 - 19549518
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaa-taaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtatt 314  Q
    ||||| ||| |||||||||||||| | || |||||||||| |||||||||  | ||||  |||||||| ||||| |||||||||||  ||||||| ||||    
T  19549415 tttaactatgaaaagacaataaaatatattacaattgaaaataaaactatggtctcaaaattttcaaatcaactcataaaatagtacgaatcataatatt 19549514  T
Q  315 tagc 318  Q
    ||||    
T  19549515 tagc 19549518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 204 - 264
Target Start/End: Original strand, 4572320 - 4572379
Alignment:
Q  204 ccattgtctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaaacta 264  Q
    ||||| || ||| ||||| ||| ||||||||| |||||||||||||| |||||||||||||    
T  4572320 ccattatccgcactttaactatgaaaagacaa-aaaaaacatcacaaatgaaataaaacta 4572379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Complemental strand, 22632287 - 22632244
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||    
T  22632287 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaa 22632244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Complemental strand, 23141670 - 23141623
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  23141670 gcattttaactatgaaaagacaata-aaaatatcacaattgaaataaaa 23141623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 29455856 - 29455903
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||| ||||||| ||||||||||||||||||||||||    
T  29455856 tttaactatgaaaagataataaaa-acatcacaattgaaataaaactat 29455903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 24)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 315
Target Start/End: Original strand, 16278500 - 16278598
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttc-aaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||||||||||||||||||| |||||||||||| |||||||||| || |||||||||  ||||||||| |||||||||| |||||||||||||||    
T  16278500 tttaattataaaaagacaataaaaa-catcacaattgatataaaactatgatccaattttttttaaagcaactcataaaatagttgaaatcatagtattt 16278598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 36074167 - 36074062
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaa---ttttttcaaagcaactaataaaatagtagaaatcatagtat 313  Q
    |||||||||||| ||||||| |||||||||||||||||||||||| ||| || |||   |||||| ||| ||||| ||||||||||||||||| ||||||    
T  36074167 tttaattataaatagacaattaaaaacatcacaattgaaataaaattatgatccaattttttttttaaaacaacttataaaatagtagaaatcgtagtat 36074068  T
Q  314 ttagcc 319  Q
    | ||||    
T  36074067 taagcc 36074062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 218 - 312
Target Start/End: Original strand, 7376616 - 7376712
Alignment:
Q  218 ttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttt--tcaaagcaactaataaaatagtagaaatcatagta 312  Q
    ||||||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||  | ||| ||||| |||||||| |||||||| |||||    
T  7376616 ttaattataaaaagataataaaaaatatcacaattgaaataaaactatgatccaattttttattaaaacaactcataaaatactagaaatcgtagta 7376712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Original strand, 44300794 - 44300887
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  44300794 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 44300887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 227 - 317
Target Start/End: Complemental strand, 40789564 - 40789473
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttag 317  Q
    |||| |||||||||||||||||||||||||||||||||| || | || || || ||| ||||||||||||||||| ||||| || |||||||    
T  40789564 aaaaaacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaatagtacaaatcgtaatatttag 40789473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 17172252 - 17172159
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  17172252 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 17172159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 28067304 - 28067211
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||||||| |||||||||||||||| ||| || | ||   ||||||| ||||||||||||||||| ||||  ||||||||||||    
T  28067304 aaaagacaataaaaaacaccacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaattgtagtatttagcc 28067211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 40342363 - 40342256
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagt 311  Q
    ||||||||| ||| ||||||||||||||||   |||||||||||||||||||| || | ||   ||||||| |||||||||||||| ||  |||| ||||    
T  40342363 gcattttaactatgaaaagacaataaaaaaacccacaattgaaataaaactatgatccaaaaaatttcaaatcaactaataaaataatatgaatcgtagt 40342264  T
Q  312 atttagcc 319  Q
    ||||||||    
T  40342263 atttagcc 40342256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 278
Target Start/End: Complemental strand, 5924113 - 5924051
Alignment:
Q  217 tttaattataaaaagacaataaaaaa-catcacaattgaaataaaactattattcaatttttt 278  Q
    ||||| ||| |||||||||||||||| ||||||||||||||||||||||| || |||||||||    
T  5924113 tttaactatgaaaagacaataaaaaagcatcacaattgaaataaaactataatccaatttttt 5924051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 38398475 - 38398378
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||| || || ||||||||||  |||| |||||||| ||| || |||| |||||    
T  38398475 tttaactatgaaaagacaataaaaa-cattacaattgaaataaaactatgatccatttttttcaaataaactcataaaatattaggaaccataatattt 38398378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 217 - 315
Target Start/End: Complemental strand, 38401017 - 38400920
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||| ||| ||||||||||||||| ||| ||||||||||||||||||| || || ||||||||||  |||| |||||||| ||| || |||| |||||    
T  38401017 tttaactatgaaaagacaataaaaa-cattacaattgaaataaaactatgatccatttttttcaaataaactcataaaatattaggaaccataatattt 38400920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 217 - 319
Target Start/End: Original strand, 2960006 - 2960109
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||| ||| ||| ||||||||||||||||||||||||||||||| ||| || | ||   ||||||| ||||| |||||||||||  |||  ||||||||    
T  2960006 tttaactatgaaatgacaataaaaaacatcacaattgaaataaaattatgatccaaaaaatttcaaatcaactcataaaatagtacgaattgtagtattt 2960105  T
Q  316 agcc 319  Q
    ||||    
T  2960106 agcc 2960109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 224 - 263
Target Start/End: Original strand, 21153277 - 21153316
Alignment:
Q  224 ataaaaagacaataaaaaacatcacaattgaaataaaact 263  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  21153277 ataaaaagacaataaaaaacaccacaattgaaataaaact 21153316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 227 - 317
Target Start/End: Original strand, 30391629 - 30391720
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttag 317  Q
    |||||||||||||||||| ||||||||||||||||| || || | ||   ||||||| ||||| |||||||||||  |||| ||||||||||    
T  30391629 aaaagacaataaaaaacagcacaattgaaataaaaccatgatccaaaaaatttcaaatcaactcataaaatagtatgaatcgtagtatttag 30391720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 48644536 - 48644454
Alignment:
Q  235 ataaaaaacatcacaattgaaataaaactattattcaattttttc-aaagcaactaataaaatagtagaaatcatagtattta 316  Q
    |||||||||||||||||| |||||||| | | || |||||||||  ||||||||| ||||||||||| ||||  |||||||||    
T  48644536 ataaaaaacatcacaattcaaataaaattgtgatccaattttttttaaagcaactcataaaatagtacaaattgtagtattta 48644454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 43394321 - 43394269
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaactatt 266  Q
    ||||||||||||| ||||||||||| |||| ||||||||| |||||||||||||    
T  43394321 gcattttaattatgaaaagacaata-aaaatatcacaattaaaataaaactatt 43394269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 9477717 - 9477764
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  9477717 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaactat 9477764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 42284576 - 42284623
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||||||    
T  42284576 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaactat 42284623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 265
Target Start/End: Complemental strand, 43702457 - 43702410
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| ||||||||||||||| |||||||||||||||||||||||    
T  43702457 tttaactatgaaaagacaataaaaa-catcacaattgaaataaaactat 43702410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 319
Target Start/End: Complemental strand, 38469954 - 38469859
Alignment:
Q  225 taaaaagacaataaaaaacatcacaattgaaataaaactattattca-attttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||| ||||||||||||| ||||||| |||||||||||| || || |   ||||||| ||||| ||||||||||| ||||  || |||||||||    
T  38469954 taaaaatacaataaaaaacaccacaattaaaataaaactataatccataaaatttcaaatcaacttataaaatagtacaaatagtaatatttagcc 38469859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 214 - 314
Target Start/End: Original strand, 11244092 - 11244194
Alignment:
Q  214 cattttaattataaaaagacaataaaaaacatcacaattg-aaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagt 311  Q
    |||||||| ||| |||||||||||||| | |||||||||| ||||||||||||  |  |||  |||||||| ||||| |||||||||||  ||||||| |    
T  11244092 cattttaactatgaaaagacaataaaatatatcacaattgaaaataaaactatggtcccaaaattttcaaatcaactcataaaatagtaagaatcataat 11244191  T
Q  312 att 314  Q
    |||    
T  11244192 att 11244194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 300
Target Start/End: Complemental strand, 24430337 - 24430264
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagta 300  Q
    ||||| ||||||||  |||||||||||||||||| ||| |||| ||  |||||||| ||||| |||||||||||    
T  24430337 aaagataataaaaataatcacaattgaaataaaaatatgattcaaaagttttcaaaacaacttataaaatagta 24430264  T

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Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 260
Target Start/End: Complemental strand, 30738683 - 30738635
Alignment:
Q  211 ctgcattttaattataaaaagacaataaaaaacatcacaattgaaataaa 260  Q
    ||||| ||||| ||| ||||||||||||||| ||||||||||||||||||    
T  30738683 ctgcactttaactatgaaaagacaataaaaa-catcacaattgaaataaa 30738635  T

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Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 224 - 264
Target Start/End: Original strand, 3363041 - 3363081
Alignment:
Q  224 ataaaaagacaataaaaaacatcacaattgaaataaaacta 264  Q
    ||||||| | ||||||||||||||||| |||||||||||||    
T  3363041 ataaaaataaaataaaaaacatcacaaatgaaataaaacta 3363081  T

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Target: scaffold0005 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 217 - 319
Target Start/End: Complemental strand, 222004 - 221901
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactattat-tcaattttttcaaagcaactaataaaatagtagaaatcatagtattt 315  Q
    ||||||||||||| |||||||||||| ||||| |||||||||||||||| || | | |||||| ||||||||| ||||||||| ||||||| ||||||||    
T  222004 tttaattataaaacgacaataaaaaatatcaccattgaaataaaactatgatctaattttttttaaagcaactcataaaataggagaaatcgtagtattt 221905  T
Q  316 agcc 319  Q
    ||||    
T  221904 agcc 221901  T

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Target: chr6 (Bit Score: 50; Significance: 2e-19; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 33960182 - 33960089
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||| |||||||||||||||||||||||||||| |||| || || || ||| |||||||||||||||||  |||| ||||||||||||    
T  33960182 aaaagacaatgaaaaacatcacaattgaaataaaactatgattcaaaattatttaaatcaactaataaaatagtacgaatcgtagtatttagcc 33960089  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 24447153 - 24447060
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    ||||||||||||||||||||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  24447153 aaaagacaataaaaaacatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 24447060  T

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Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 227 - 319
Target Start/End: Complemental strand, 1221742 - 1221649
Alignment:
Q  227 aaaagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||||| |||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  1221742 aaaagacaataaaaaatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatacgaattgtagtatttagcc 1221649  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 265
Target Start/End: Original strand, 6938113 - 6938160
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaactat 265  Q
    ||||| ||| |||||||||||||| ||||||||||||||| ||||||||    
T  6938113 tttaactatgaaaagacaataaaa-acatcacaattgaaacaaaactat 6938160  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 12429495 - 12429538
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||| ||| |||||||||||||| ||||||||||||||||||||    
T  12429495 tttaactatgaaaagacaataaaa-acatcacaattgaaataaaa 12429538  T

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Target: scaffold0938 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0938
Description:

Target: scaffold0938; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Original strand, 542 - 634
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattcaattt-tttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||| ||||||  ||||||||||||||| ||| || |||    ||||||| ||||||||||||||||| ||||| ||||||||||||    
T  542 aaagacaatagaaaacactacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagcc 634  T

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Target: scaffold0062 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 23910 - 23818
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattcaattt-tttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||| ||||||  ||||||||||||||| ||| || |||    ||||||| ||||||||||||||||| ||||| ||||||||||||    
T  23910 aaagacaatagaaaacactacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagcc 23818  T

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Target: scaffold0062; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 34078 - 33986
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattcaattt-tttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||| ||||||  ||||||||||||||| ||| || |||    ||||||| ||||||||||||||||| ||||| ||||||||||||    
T  34078 aaagacaatagaaaacactacaattgaaataaaattatgatccaaaaaatttcaaatcaactaataaaatagtataaatcgtagtatttagcc 33986  T

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Target: scaffold0230 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 229 - 319
Target Start/End: Original strand, 26712 - 26803
Alignment:
Q  229 aagacaataaaaaacatcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||| |||||||||||||||||||||| || | || || || ||| |||||||||||||| ||  |||  ||||||||||||    
T  26712 aagacaataaaaaatatcacaattgaaataaaactatgatccaaaattatttaaatcaactaataaaataatatgaattgtagtatttagcc 26803  T

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Target: scaffold0056 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 228 - 319
Target Start/End: Complemental strand, 72626 - 72537
Alignment:
Q  228 aaagacaataaaaaacatcacaattgaaataaaactattattcaattttttcaaagcaactaataaaatagtagaaatcatagtatttagcc 319  Q
    |||||||||||||| ||||||||||||||||||| ||| ||| | |||||| |||  |||| |||||||||||  |||||||| ||||||||    
T  72626 aaagacaataaaaa-catcacaattgaaataaaattatgatt-attttttttaaattaactcataaaatagtatgaatcatagcatttagcc 72537  T

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Target: scaffold0160 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 213 - 319
Target Start/End: Complemental strand, 26173 - 26065
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaaca-tcacaattgaaataaaactattattc-aattttttcaaagcaactaataaaatagtagaaatcatag 310  Q
    ||||||||| ||| |||||||||||||||| |  |||||||||||||||||||| || | ||   ||||||| ||||| |||||||| ||  |||| |||    
T  26173 gcattttaactatgaaaagacaataaaaaaaagccacaattgaaataaaactatgatccaaaaaatttcaaatcaactcataaaataatatgaatcgtag 26074  T
Q  311 tatttagcc 319  Q
    |||||||||    
T  26073 tatttagcc 26065  T

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Target: scaffold0102 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0102
Description:

Target: scaffold0102; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 261
Target Start/End: Original strand, 16515 - 16559
Alignment:
Q  217 tttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    ||||| |||||||||||||||||||| |||| |||||||||||||    
T  16515 tttaactataaaaagacaataaaaaatatcagaattgaaataaaa 16559  T

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Target: scaffold0249 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 261
Target Start/End: Original strand, 20094 - 20142
Alignment:
Q  213 gcattttaattataaaaagacaataaaaaacatcacaattgaaataaaa 261  Q
    |||||||||  || |||||||||| |||||| |||||||||||||||||    
T  20094 gcattttaaccatgaaaagacaattaaaaacgtcacaattgaaataaaa 20142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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