View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_38 (Length: 424)
Name: NF1125_low_38
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 29 - 388
Target Start/End: Complemental strand, 24273770 - 24273420
Alignment:
| Q |
29 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
128 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24273770 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
24273671 |
T |
|
| Q |
129 |
tcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaa |
228 |
Q |
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|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||| ||| |
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| T |
24273670 |
tcgacaacaacgacattacacggtgccttctcttgttgcatctacctcttcttgggataatcatgcttccaatgccccttctccttacagtaattgcaaa |
24273571 |
T |
|
| Q |
229 |
tatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatctctaannnnnnnnnnnnnngtttactactaa |
328 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||||| |||| |||||||||||| |
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| T |
24273570 |
tatcaatcggtttcggatccctactaactggtttcttagaaaatttctttttccatgatttaccatatccctaa---------ttgttgtttactactaa |
24273480 |
T |
|
| Q |
329 |
cccaatagtctaactatccaaaaaagtgtcactacagttatgtcgtcgttctctactttg |
388 |
Q |
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||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |
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| T |
24273479 |
cccaatagtctaactatccaagatagtgtcactacagttatgtcgtcgttctctactttg |
24273420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 77; Significance: 1e-35; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 29 - 281
Target Start/End: Original strand, 9009346 - 9009598
Alignment:
| Q |
29 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
128 |
Q |
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|||||||||||| ||| ||||| | |||||||||||| |||||||||||||| | |||||||||||| |||| ||| ||| ||||||||| ||||| |
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| T |
9009346 |
aatatgataagattctccagaatccaaaacccacacatcggtgtaatgtgtgtgaccttcaacaactaaggcgataaccttttcggaatgtgtatcatcc |
9009445 |
T |
|
| Q |
129 |
tcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaa |
228 |
Q |
| |
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|| |||||| ||||||||| | |||||| ||||||||| | ||||||||||||| ||| || ||||||||| | ||||||||||| |||||| ||| |
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| T |
9009446 |
tcggcaacagagacattacatgatgccttctattgttgcattttcctcttcttgggacaatcattcttccaatggtcattctccttacagtaattgcaaa |
9009545 |
T |
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| Q |
229 |
tatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttc |
281 |
Q |
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||||| |||||||| || | || |||| ||| |||||||| || || |||||| |
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| T |
9009546 |
tatcagtcggtttcagacctctactaattggattcttagagaacttttttttc |
9009598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 53471489 - 53471603
Alignment:
| Q |
29 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
128 |
Q |
| |
|
|||||||||||| ||| |||||| ||||||||||||||| ||||||||||||| || |||||||||||| |||||||||||| ||||||||||||||| |
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| T |
53471489 |
aatatgataagatgctccggaatccagaacccacacatcagtgtaatgtgtgtggccatcaacaactaaggcgatatcctcttcggaatgtgtaccatcc |
53471588 |
T |
|
| Q |
129 |
tcagcaacaacgaca |
143 |
Q |
| |
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|| |||||||||||| |
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| T |
53471589 |
tcggcaacaacgaca |
53471603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 297
Target Start/End: Original strand, 53471630 - 53471727
Alignment:
| Q |
200 |
atgccccttctccttacaataattgaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatc |
297 |
Q |
| |
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|||||| ||||||||||| |||||| |||||||| ||||| || || |||| || ||||||||||| || || |||| |||| |||||||||||| |
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| T |
53471630 |
atgccctttctccttacagtaattgcaaatatcattcggtgtcagaccccttctgtgcggtttcttagagaacttattttcccctgatttaccatatc |
53471727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 76; Significance: 5e-35; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 91 - 302
Target Start/End: Original strand, 13419183 - 13419394
Alignment:
| Q |
91 |
caactaaggtgatatcctcttcagaatgtgtaccatcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataata |
190 |
Q |
| |
|
||||||||| |||||| ||||| ||||||||||| |||||||||||||||||| |||| | ||||||| ||||||||| ||||||||||||| ||| |
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| T |
13419183 |
caactaaggggatatcttcttcggaatgtgtaccttcctcagcaacaacgacaatacatgataccttctgttgttgcattagcctcttcttgggacaatc |
13419282 |
T |
|
| Q |
191 |
atgcttccaatgccccttctccttacaataattgaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcattta |
290 |
Q |
| |
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|| |||| ||||| ||||||| ||||| |||||| |||||| | ||| |||| || |||| || | ||||||||||| || |||||||| ||| ||||| |
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| T |
13419283 |
attcttctaatgctccttctctttacagtaattgcaaatattagtcgatttcagacccctactgattggtttcttagtcaacttcttttttcctgattta |
13419382 |
T |
|
| Q |
291 |
ccatatctctaa |
302 |
Q |
| |
|
||||||| |||| |
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| T |
13419383 |
ccatatccctaa |
13419394 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 297
Target Start/End: Complemental strand, 30047337 - 30047078
Alignment:
| Q |
29 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtgaacaacaacaactaaggtgatatcctcttcagaatgtgtaccatcc |
128 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||| ||| | |||||||||||| || ||||||||||||||||||||||||| ||||||| |
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| T |
30047337 |
aatatgataagacgctccggaatctagaacccacatatcggtataatgtgtgtgaccatcaacaactaaggtgatatcctcttcggaatgtg-------- |
30047246 |
T |
|
| Q |
129 |
tcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgccccttctccttacaataattgaaaa |
228 |
Q |
| |
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| |||||| ||||| ||| | |||||| |||||||| | ||||||||||| ||| || ||||||||| |||||||| ||||| |||||| ||| |
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| T |
30047245 |
-cggcaacatcgacagtacctgatgccttctagtgttgcattggcgtcttcttgggacaatcatacttccaatgtcccttctctttacagtaattgcaaa |
30047147 |
T |
|
| Q |
229 |
tatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatc |
297 |
Q |
| |
|
||||| |||||||| || |||| || |||||||||||| || || ||||| || |||||||||||| |
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| T |
30047146 |
tatcagtcggtttcagacccctactggttggtttcttagataacttatttttatctgatttaccatatc |
30047078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 83
Target Start/End: Original strand, 13417886 - 13417940
Alignment:
| Q |
29 |
aatatgataagacactctggaatctagaacccacacatcaatgtaatgtgtgtga |
83 |
Q |
| |
|
||||||||||||| || ||||||||||||||| |||| | |||||||||||||| |
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|
| T |
13417886 |
aatatgataagacgcttcggaatctagaacccatacattagtgtaatgtgtgtga |
13417940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 108 - 297
Target Start/End: Original strand, 20289145 - 20289334
Alignment:
| Q |
108 |
tcttcagaatgtgtaccatcctcagcaacaacgacattacacggcaccttctcttgttgcatctacctcttcttgggataataatgcttccaatgcccct |
207 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||||| ||| | |||| | ||||||||||| ||||||||||||| | || ||||||||||||| |
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|
| T |
20289145 |
tcttcggaatgtgtaccatcctcggcaacaacgaccgtacctgatgccttatattgttgcatctgcctcttcttgggacgttcattcttccaatgccccc |
20289244 |
T |
|
| Q |
208 |
tctccttacaataattgaaaatatcaatcggtttcggatccctgctaactggtttcttagaaaatttctttttccctcatttaccatatc |
297 |
Q |
| |
|
|||||||| | |||||| |||||||| ||| ||| || |||| || |||||||||||||| || || |||| |||| |||||||||||| |
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|
| T |
20289245 |
tctccttatagtaattgcaaatatcagtcgaattcagacccctactgactggtttcttagagaacttattttcccctgatttaccatatc |
20289334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 382 - 420
Target Start/End: Complemental strand, 14443242 - 14443204
Alignment:
| Q |
382 |
tactttggtgatggtaacaacttatgttggtatatgttg |
420 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14443242 |
tactttggtgatggtaacaacttatgttggtatatgttg |
14443204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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