View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_39 (Length: 423)
Name: NF1125_low_39
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_39 |
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Alignment Details
Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 140 - 270
Target Start/End: Original strand, 1576927 - 1577056
Alignment:
| Q |
140 |
aaaacatttttatttacaatcaaaataataaaattgtttaactagatgcaacgtatctcataaattacaaaaggattagtattcacaattgtctaccgaa |
239 |
Q |
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| T |
1576927 |
aaaacatttttatttacaatcaaaataataaaattgtttaactagatgcaacgtatctcataaatctcaaaaggattagtattcacaattgtctatagaa |
1577026 |
T |
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| Q |
240 |
gatacatttggttttaccaaaacggtagata |
270 |
Q |
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| T |
1577027 |
gatacatttgg-tttaccaaaacggtagata |
1577056 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 1576845 - 1576929
Alignment:
| Q |
17 |
taataactacatcaaaatggttattctaataccaaatccaaaatattacagtatgttttattatatagattttcttttttcaaaa |
101 |
Q |
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| T |
1576845 |
taataactacatcaaaatggttattctgataccaaatccaaaatattacagtatgttttattacatagattttcttttttcaaaa |
1576929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 374
Target Start/End: Original strand, 1579902 - 1579945
Alignment:
| Q |
331 |
ttccattgccttgttatagtcgaggtcatcaatatgatgaaaat |
374 |
Q |
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| T |
1579902 |
ttccattgccttgctatagtcgaggtcatcaatatgatgaaaat |
1579945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 281 - 329
Target Start/End: Original strand, 1577121 - 1577169
Alignment:
| Q |
281 |
tcttttacaaagaataattacaagcaaaccataacagtcatacaaactc |
329 |
Q |
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| T |
1577121 |
tcttttacaacaaataattacaaacaaaccacaacaatcatacaaactc |
1577169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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