View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_low_40 (Length: 417)
Name: NF1125_low_40
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 90 - 409
Target Start/End: Complemental strand, 53651662 - 53651342
Alignment:
| Q |
90 |
tagtgagaatgaatatcttacatgagaatgataagaacacttatgaacggttagattaaaaataaacggtcaagattaaaaacaacattttgaacaatca |
189 |
Q |
| |
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||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
53651662 |
tagtgagaatggatatcttacatgagaatgatgagaacacttatgaacggttagattaaaaataaacagtcaagattaaaaacaacattttgaacaacca |
53651563 |
T |
|
| Q |
190 |
tatgactctccata-cttatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattc |
288 |
Q |
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|||||||||||||| | |||||||||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
53651562 |
tatgactctccatagcctatcaattttgatgaacccattcacggttcatcttctccaagtcactaacagcaatttcaagacagatatgagaaaatcattc |
53651463 |
T |
|
| Q |
289 |
cattgagattattaaccctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaa |
388 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |
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| T |
53651462 |
cattgagattattaaccctagctgtaagtattttatgaaattgtaattctagatctagatgaattttacaaaattgtttaatatgacaattaaactcaaa |
53651363 |
T |
|
| Q |
389 |
aatgaaattccttcctatgct |
409 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
53651362 |
aatgaaattccttcctatgct |
53651342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 1917698 - 1917743
Alignment:
| Q |
1 |
tataaaaaaggttggtatgattttgagtgtataaaaaataattttt |
46 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1917698 |
tataaaaaaggttggtatgattttgagtgtataaaaaataattttt |
1917743 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 33960171 - 33960137
Alignment:
| Q |
332 |
aaattctagatctagatgaatttgaaaaaattgtt |
366 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||| |
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|
| T |
33960171 |
aaattctagatctagatgaatttgacaaaattgtt |
33960137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 56459786 - 56459730
Alignment:
| Q |
111 |
atgagaatgataagaacacttatgaacggttagattaaaaataaacggtcaagatta |
167 |
Q |
| |
|
||||||||| | ||||||||||| ||| |||||||||||||||| |||| |||||| |
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|
| T |
56459786 |
atgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta |
56459730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 206 - 409
Target Start/End: Original strand, 17490372 - 17490575
Alignment:
| Q |
206 |
tatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17490372 |
tatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
17490471 |
T |
|
| Q |
306 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17490472 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
17490571 |
T |
|
| Q |
406 |
tgct |
409 |
Q |
| |
|
|||| |
|
|
| T |
17490572 |
tgct |
17490575 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 206 - 409
Target Start/End: Complemental strand, 17562842 - 17562639
Alignment:
| Q |
206 |
tatcaattttgatgaacccattgacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
305 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17562842 |
tatcaattttgatgaacccattcacggatcatcttctccaagtcactaacaacaatttcaagacagatctgagaaaatcattccattgagattattaacc |
17562743 |
T |
|
| Q |
306 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
405 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17562742 |
ctagctgtaagtattttaagaaattgaaattctagatctagatgaatttgaaaaaattgtttaatatgacaattaaacttaaaaatgaaattccttccta |
17562643 |
T |
|
| Q |
406 |
tgct |
409 |
Q |
| |
|
|||| |
|
|
| T |
17562642 |
tgct |
17562639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 332 - 364
Target Start/End: Original strand, 39323255 - 39323287
Alignment:
| Q |
332 |
aaattctagatctagatgaatttgaaaaaattg |
364 |
Q |
| |
|
||||||||||||||||||||||||| ||||||| |
|
|
| T |
39323255 |
aaattctagatctagatgaatttgacaaaattg |
39323287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 34064913 - 34064853
Alignment:
| Q |
111 |
atgagaatgataagaacacttatgaacggttagattaaaaataaacggtcaagattaaaaa |
171 |
Q |
| |
|
||||||||| | ||||||||||| ||| |||||||||||||||| |||| |||||||||| |
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|
| T |
34064913 |
atgagaatggtgagaacacttatcaacctttagattaaaaataaatggtctagattaaaaa |
34064853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 111 - 167
Target Start/End: Original strand, 19402357 - 19402413
Alignment:
| Q |
111 |
atgagaatgataagaacacttatgaacggttagattaaaaataaacggtcaagatta |
167 |
Q |
| |
|
||||||||| | ||||||||||| ||| |||||||||||||||| |||| |||||| |
|
|
| T |
19402357 |
atgagaatggtgagaacacttatcaacctttagattaaaaataaatggtccagatta |
19402413 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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