View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_42 (Length: 400)
Name: NF1125_low_42
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_42 |
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Alignment Details
Target: chr4 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 27 - 371
Target Start/End: Complemental strand, 49772149 - 49771805
Alignment:
| Q |
27 |
agttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaacattatgtaaaa |
126 |
Q |
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| T |
49772149 |
agttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttttctcattcaaacattatgtaaaa |
49772050 |
T |
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| Q |
127 |
aggtcaaggtgattctttgcttaaaaatgagtacaaaaataagtgtaaccatacttaaagcagagtagcttcttaatacaatggcattcacaaaagatgg |
226 |
Q |
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| T |
49772049 |
aggtcaaggtgattctttgcttaaaaattagtacaaaaataagtgtaaccatacttgaagcagagtagcttcttaatacaatggcattcacaaaagatgg |
49771950 |
T |
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| Q |
227 |
atagttaattttggatatcactttgcatgatttccaagggttttaggagaaacatgtgctaagagccatgaggatttcatgctgtaataaaaatgcatgc |
326 |
Q |
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| T |
49771949 |
atagttaattttggatatcactttgcatgatatccaagggttttaggagaaacatgtgctaagagccatgaggatttcatgctgtaataaaaatgcatgc |
49771850 |
T |
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| Q |
327 |
atataagtatacaccggtgaatttcactgtgactatagaaaaaac |
371 |
Q |
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| T |
49771849 |
atataagtatactccggtgaatttcactctgactatagaaaaaac |
49771805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 168; E-Value: 6e-90
Query Start/End: Original strand, 27 - 291
Target Start/End: Original strand, 8005200 - 8005455
Alignment:
| Q |
27 |
agttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaacattatgtaaaa |
126 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8005200 |
agttcttgcagagctgtttcttgatcagtgataaacccctagacaatatatatttcagaacacaaatcaatgttttctctcattcaaacattatgtaaaa |
8005299 |
T |
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| Q |
127 |
aggtcaaggtgattctttgcttaaaaatgagtacaaaaataagtgtaaccatacttaaagcagagtagcttcttaatacaatggcattcacaaaagatgg |
226 |
Q |
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|||||||||||||||||| ||| ||||| | |||||||| ||||||||| || || ||||||||||||||||||| |||| | ||||||||| |
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| T |
8005300 |
aggtcaaggtgattctttcctt-aaaattaatacaaaaacaagtgtaactatgtttgaagcagagtagcttcttaa--------catttataaaagatgg |
8005390 |
T |
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| Q |
227 |
atagttaattttggatatcactttgcatgatttccaagggttttaggagaaacatgtgctaagag |
291 |
Q |
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| T |
8005391 |
atagttaattttcgatatcacatcgcatgatatccaagggttttaggagaaacatgtgctcagag |
8005455 |
T |
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