View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_43 (Length: 396)

Name: NF1125_low_43
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_43
NF1125_low_43
[»] chr4 (8 HSPs)
chr4 (102-396)||(46015526-46015820)
chr4 (206-363)||(46027579-46027736)
chr4 (160-363)||(46427900-46428092)
chr4 (183-287)||(46021042-46021144)
chr4 (183-248)||(46428520-46428584)
chr4 (186-309)||(46304004-46304125)
chr4 (186-239)||(46028205-46028258)
chr4 (179-238)||(24803076-24803135)
[»] chr8 (2 HSPs)
chr8 (183-241)||(4525565-4525623)
chr8 (183-244)||(4522770-4522831)
[»] chr1 (10 HSPs)
chr1 (183-253)||(50667478-50667548)
chr1 (198-254)||(3801975-3802031)
chr1 (179-229)||(20949981-20950031)
chr1 (179-229)||(20950952-20951002)
chr1 (179-253)||(50668298-50668372)
chr1 (186-287)||(3803692-3803793)
chr1 (184-244)||(25481831-25481889)
chr1 (184-244)||(25862146-25862204)
chr1 (198-247)||(50669602-50669651)
chr1 (184-251)||(25887882-25887947)


Alignment Details
Target: chr4 (Bit Score: 259; Significance: 1e-144; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 102 - 396
Target Start/End: Original strand, 46015526 - 46015820
Alignment:
Q  102 attattatatccattgccgttcttctattctgttcgttgctattgttgttgtgccttgttccttttttaactttcaatcaaccatattaaaataacctca 201  Q
    ||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015526 attattatatccaatgccgttcttctattctgttagttgctattgttgttgtgccttgttccttttttaactttcaatcaaccatattaaaataacctca 46015625  T
Q  202 ccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaacaaaaggtaag 301  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46015626 ccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaacaaaaagtaag 46015725  T
Q  302 acgcacaaggagaaattttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgtcacagagcgagagaaacagtttattgctaata 396  Q
    ||||| | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||| |||||||||    
T  46015726 acgcatagggagaaagtttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttgccgcagagcgagagaaacagtttcttgctaata 46015820  T

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Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 206 - 363
Target Start/End: Original strand, 46027579 - 46027736
Alignment:
Q  206 ttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgctaagaaacaaaaggtaagacgc 305  Q
    ||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||| ||| ||||| |||||| ||    
T  46027579 ttcatattttatttgatcaaaacattaaacagaatttgctgaggagcgttgtttaattacaaacaaaaatgaagttgctatgaagcaaaaagtaagaagc 46027678  T
Q  306 acaaggagaaattttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaagttg 363  Q
    |||| |||||| |||||| ||| | |||||||||||||||||||||||||||||||||    
T  46027679 acaaagagaaagtttcgtgtggtgtatgttcgtcgtgcaagaaacaagaacgaagttg 46027736  T

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Target: chr4; HSP #3
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 160 - 363
Target Start/End: Original strand, 46427900 - 46428092
Alignment:
Q  160 ttccttttttaactttcaatcaaccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgttt 259  Q
    |||||||||||||||||||    |||| ||||||| || |||  |||||||||| ||||||||||||||||||||||||||||||||| |||||||||||    
T  46427900 ttccttttttaactttcaa----ccatgttaaaattacatcaatctttcatttt-tatttgatcaaaacattaaacagaatttgctaaagagcattgttt 46427994  T
Q  260 aaatacaaacaaaaatgaagttgctaagaaacaaaaggtaagacgcacaaggagaaattttcgtctggagaatgttcgtcgtgcaagaaacaagaacgaa 359  Q
    |||||||| ||||| ||||||||||||||  || || |||||| |||||| |||||| ||||||       |||||||||||||||||||||||||||||    
T  46427995 aaatacaagcaaaagtgaagttgctaagaggcagaaagtaagaagcacaaagagaaagtttcgt------gatgttcgtcgtgcaagaaacaagaacgaa 46428088  T

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Target: chr4; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 287
Target Start/End: Original strand, 46021042 - 46021144
Alignment:
Q  183 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttg 282  Q
    |||||||||||||||||||||  ||||||| |||||| || |||||||||||||||||||| |||| ||| | ||| ||| |  ||||||||||||||||    
T  46021042 ccatattaaaataacctcacc--ttcatttcttatttcataaaaacattaaacagaatttggtaagaagcgtagttcaaaaaacaacaaaaatgaagttg 46021139  T
Q  283 ctaag 287  Q
     ||||    
T  46021140 gtaag 46021144  T

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Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 248
Target Start/End: Original strand, 46428520 - 46428584
Alignment:
Q  183 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaag 248  Q
    |||||||||||||||||||||||| ||||| ||| |||||||||||||||||||||||||| ||||    
T  46428520 ccatattaaaataacctcaccctt-catttcttaattgatcaaaacattaaacagaatttggtaag 46428584  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 309
Target Start/End: Complemental strand, 46304125 - 46304004
Alignment:
Q  186 tattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgcta 285  Q
    ||||||||||| |||||||||   ||| ||| ||||||||||||| || |||||||||||||||||| |   | ||| |  ||||||||||||||||||     
T  46304125 tattaaaataatctcacccttg--tttcttaattgatcaaaacataaatcagaatttgctaaggagcgtcactcaaaaaacaacaaaaatgaagttgctg 46304028  T
Q  286 agaaacaaaaggtaagacgcacaa 309  Q
    |||| ||||| ||| | |||||||    
T  46304027 agaagcaaaaagtagggcgcacaa 46304004  T

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Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 239
Target Start/End: Original strand, 46028205 - 46028258
Alignment:
Q  186 tattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaa 239  Q
    |||||| |||| ||||||||||| ||| |||||||||||||||||| |||||||    
T  46028205 tattaatataatctcaccctttcgtttcttatttgatcaaaacatttaacagaa 46028258  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 179 - 238
Target Start/End: Complemental strand, 24803135 - 24803076
Alignment:
Q  179 tcaaccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacaga 238  Q
    |||||||||| |||||||  ||| |||||  ||||||||||||||||||||| |||||||    
T  24803135 tcaaccatatcaaaataagttcatccttttgttttttatttgatcaaaacataaaacaga 24803076  T

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Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 4525623 - 4525565
Alignment:
Q  183 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatt 241  Q
    ||||||||||| |||||||||||||||||| ||||||||| ||||||||||||||||||    
T  4525623 ccatattaaaacaacctcaccctttcatttcttatttgataaaaacattaaacagaatt 4525565  T

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Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 183 - 244
Target Start/End: Complemental strand, 4522831 - 4522770
Alignment:
Q  183 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgc 244  Q
    |||||||||||| | ||||||||||  ||| |||||||||||||| ||||||||||||||||    
T  4522831 ccatattaaaatgatctcacccttttgtttcttatttgatcaaaatattaaacagaatttgc 4522770  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 183 - 253
Target Start/End: Original strand, 50667478 - 50667548
Alignment:
Q  183 ccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagca 253  Q
    |||| |||||||| ||||||||||| |||| |||||||||||||||| ||||  ||| |||||||||||||    
T  50667478 ccatgttaaaatatcctcaccctttgatttcttatttgatcaaaacaataaatcgaagttgctaaggagca 50667548  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 198 - 254
Target Start/End: Complemental strand, 3802031 - 3801975
Alignment:
Q  198 ctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcat 254  Q
    ||||||||||  ||| |||||||||||||||||||| ||||||||||||| ||||||    
T  3802031 ctcacccttttgtttcttatttgatcaaaacattaatcagaatttgctaaagagcat 3801975  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 20949981 - 20950031
Alignment:
Q  179 tcaaccatattaaaataacctcaccctttcattttttatttgatcaaaaca 229  Q
    ||||||||||||||||| ||||||| |||  || |||||||||||||||||    
T  20949981 tcaaccatattaaaatatcctcaccttttggttgtttatttgatcaaaaca 20950031  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 229
Target Start/End: Original strand, 20950952 - 20951002
Alignment:
Q  179 tcaaccatattaaaataacctcaccctttcattttttatttgatcaaaaca 229  Q
    ||||||||||||||||| ||||||| |||  || |||||||||||||||||    
T  20950952 tcaaccatattaaaatatcctcaccttttggttgtttatttgatcaaaaca 20951002  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 253
Target Start/End: Original strand, 50668298 - 50668372
Alignment:
Q  179 tcaaccatattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagca 253  Q
    ||||||||||| ||| | |||||||||||  ||| |||||||||||||||| | |||| || |||||||| ||||    
T  50668298 tcaaccatattgaaacatcctcaccctttggtttcttatttgatcaaaacaatgaacaaaagttgctaagcagca 50668372  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 287
Target Start/End: Complemental strand, 3803793 - 3803692
Alignment:
Q  186 tattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggagcattgtttaaatacaaacaaaaatgaagttgcta 285  Q
    ||||||| ||| |||||||||   ||| ||||||  ||||||||||||||||||||||||| | ||  | | | ||| |  |||||||||||||||||||    
T  3803793 tattaaattaatctcacccttctgtttcttatttcttcaaaacattaaacagaatttgctatgaagtgtcgctcaaaaaacaacaaaaatgaagttgcta 3803694  T
Q  286 ag 287  Q
    ||    
T  3803693 ag 3803692  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Complemental strand, 25481889 - 25481831
Alignment:
Q  184 catattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgc 244  Q
    |||||||||||| ||||||| ||   ||| |||||||||||||||| ||||||||||||||    
T  25481889 catattaaaatatcctcacctttg--tttgttatttgatcaaaacaataaacagaatttgc 25481831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 184 - 244
Target Start/End: Original strand, 25862146 - 25862204
Alignment:
Q  184 catattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgc 244  Q
    |||||||||||| ||||||| ||   ||| |||||||||||||||| ||||||||||||||    
T  25862146 catattaaaatatcctcacctttg--tttgttatttgatcaaaacaataaacagaatttgc 25862204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 247
Target Start/End: Original strand, 50669602 - 50669651
Alignment:
Q  198 ctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaa 247  Q
    ||||||||||  ||| |||||||||||||||| ||||||||| |||||||    
T  50669602 ctcaccctttggtttcttatttgatcaaaacaataaacagaagttgctaa 50669651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 184 - 251
Target Start/End: Original strand, 25887882 - 25887947
Alignment:
Q  184 catattaaaataacctcaccctttcattttttatttgatcaaaacattaaacagaatttgctaaggag 251  Q
    |||||||||||| ||||||| ||   ||| |||||||||||||||| ||||||||| |||| ||||||    
T  25887882 catattaaaatatcctcacctttg--tttgttatttgatcaaaacaataaacagaacttgccaaggag 25887947  T

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