View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_44 (Length: 395)
Name: NF1125_low_44
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_44 |
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| [»] scaffold0049 (1 HSPs) |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 362; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 1 - 366
Target Start/End: Complemental strand, 40653832 - 40653467
Alignment:
| Q |
1 |
aatgataaacattgtgacatgtatgaccaaccttgcaccatcttttggagcgcttcgacggcaagagtgtcggtaaggacgaatactggattccttgtca |
100 |
Q |
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| T |
40653832 |
aatgataaacattgtgacatgtatgaccaaccttgcaccatcttttggagtgcttcgacggcaagagtgtcggtaaggacgaatactggattccttgtca |
40653733 |
T |
|
| Q |
101 |
taaccttggaacaaggtgtgtcttcaagattaacttcacgcgcaataactcttgttaatatatcctttaaccacaaaaaataggacagccagttatgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40653732 |
taaccttggaacaaggtgtgtcttcaagattaacttcacgcgcaataactcttgttaatatatcctttaaccacaaaaaataggacagccagttatgcat |
40653633 |
T |
|
| Q |
201 |
gctttttgtgcagaaatccaattccattcctttccatatttttctctcttgtcaaagtaataaaaggaagatcgagtcataccttgtctgtgaggattcc |
300 |
Q |
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| T |
40653632 |
gctttttgtgcagaaatccaattccattcctttccatatttttctctcttgtcaaagtaataaaaggaagatcgagtcataccttgtctgtgaggattcc |
40653533 |
T |
|
| Q |
301 |
acagagcaaagcattagaatcagttagtaacagagcatctactctgcgaacagccattcgacgaca |
366 |
Q |
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| T |
40653532 |
acagagcaaagcattagaatcagttagtaacagagcatctactctgcgaacagccattcgacgaca |
40653467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 26 - 133
Target Start/End: Complemental strand, 45428259 - 45428152
Alignment:
| Q |
26 |
accaaccttgcaccatcttttggagcgcttcgacggcaagagtgtcggtaaggacgaatactggattccttgtcataaccttggaacaaggtgtgtcttc |
125 |
Q |
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||||||||||||||||||||||||| ||||| || |||||||| || | |||||| ||||| ||||| |||||||||||||||||| ||| |||||||| |
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| T |
45428259 |
accaaccttgcaccatcttttggagggcttccacagcaagagtttcagaaaggacaaataccggatttcttgtcataaccttggaaacaggcgtgtcttc |
45428160 |
T |
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| Q |
126 |
aagattaa |
133 |
Q |
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| |||||| |
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| T |
45428159 |
aggattaa |
45428152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 275 - 366
Target Start/End: Complemental strand, 45428016 - 45427925
Alignment:
| Q |
275 |
agtcataccttgtctgtgaggattccacagagcaaagcattagaatcagttagtaacagagcatctactctgcgaacagccattcgacgaca |
366 |
Q |
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||||| ||||||||||||||||||||||| ||||| |||||||||| || ||||| |||||||| || || || ||||||| |||||||| |
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| T |
45428016 |
agtcacaccttgtctgtgaggattccacaaagcaacccattagaatcggtgagtaatagagcatccaccctacgggcagccatccgacgaca |
45427925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0049 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0049
Description:
Target: scaffold0049; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Original strand, 4392 - 4442
Alignment:
| Q |
312 |
cattagaatcagttagtaacagagcatctactctgcgaacagccattcgac |
362 |
Q |
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| T |
4392 |
cattcgaatcagttagaaatagagcatctactttgcaaacagccattcgac |
4442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 312 - 362
Target Start/End: Complemental strand, 144797 - 144747
Alignment:
| Q |
312 |
cattagaatcagttagtaacagagcatctactctgcgaacagccattcgac |
362 |
Q |
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|||| ||||||||||| || |||||||||||| ||| |||||||||||||| |
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| T |
144797 |
cattcgaatcagttagaaatagagcatctactttgcaaacagccattcgac |
144747 |
T |
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