View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_45 (Length: 390)

Name: NF1125_low_45
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_45
NF1125_low_45
[»] chr5 (10 HSPs)
chr5 (71-383)||(31603436-31603748)
chr5 (107-383)||(31593216-31593496)
chr5 (190-383)||(31562416-31562612)
chr5 (221-383)||(31577801-31577966)
chr5 (7-46)||(15552443-15552482)
chr5 (7-46)||(31179413-31179452)
chr5 (7-46)||(3373179-3373218)
chr5 (7-46)||(21684494-21684533)
chr5 (7-38)||(31542940-31542971)
chr5 (7-38)||(31545286-31545317)
[»] scaffold0267 (1 HSPs)
scaffold0267 (7-46)||(248-287)
[»] chr8 (7 HSPs)
chr8 (7-46)||(18810961-18811000)
chr8 (7-46)||(18813135-18813174)
chr8 (7-46)||(24873223-24873262)
chr8 (7-46)||(43079856-43079895)
chr8 (7-46)||(43082227-43082266)
chr8 (7-46)||(27827239-27827278)
chr8 (7-46)||(27829550-27829589)
[»] chr7 (6 HSPs)
chr7 (7-46)||(7349315-7349354)
chr7 (7-46)||(7351694-7351733)
chr7 (7-38)||(1046967-1046998)
chr7 (7-38)||(1049338-1049369)
chr7 (7-38)||(3035940-3035971)
chr7 (7-38)||(20297578-20297609)
[»] chr6 (6 HSPs)
chr6 (7-46)||(12195557-12195596)
chr6 (7-38)||(4816273-4816304)
chr6 (7-46)||(5273258-5273297)
chr6 (7-38)||(19704609-19704640)
chr6 (7-38)||(20915398-20915429)
chr6 (7-46)||(26932604-26932643)
[»] chr4 (14 HSPs)
chr4 (7-46)||(16931831-16931870)
chr4 (7-46)||(16934185-16934224)
chr4 (7-46)||(44599880-44599919)
chr4 (7-38)||(5198680-5198711)
chr4 (7-38)||(6765104-6765135)
chr4 (7-38)||(7941583-7941614)
chr4 (7-38)||(9176516-9176547)
chr4 (7-38)||(11008610-11008641)
chr4 (7-46)||(18709206-18709245)
chr4 (7-38)||(18847413-18847444)
chr4 (7-38)||(22132434-22132465)
chr4 (7-38)||(22134659-22134690)
chr4 (7-38)||(22780415-22780446)
chr4 (7-38)||(22782780-22782811)
[»] chr3 (8 HSPs)
chr3 (7-46)||(456085-456124)
chr3 (7-46)||(458462-458501)
chr3 (7-46)||(6063486-6063525)
chr3 (7-46)||(28413072-28413111)
chr3 (7-46)||(50494177-50494216)
chr3 (7-46)||(6065836-6065875)
chr3 (7-38)||(10621570-10621601)
chr3 (7-46)||(38210548-38210587)
[»] chr2 (4 HSPs)
chr2 (7-46)||(35215628-35215667)
chr2 (7-46)||(35218005-35218044)
chr2 (7-38)||(23452279-23452310)
chr2 (7-46)||(42064688-42064727)
[»] chr1 (6 HSPs)
chr1 (7-46)||(16226365-16226404)
chr1 (7-46)||(16231761-16231800)
chr1 (7-46)||(47177560-47177599)
chr1 (7-46)||(47179911-47179950)
chr1 (7-38)||(9459461-9459492)
chr1 (7-38)||(9463288-9463319)
[»] scaffold0250 (1 HSPs)
scaffold0250 (9-46)||(3086-3123)
[»] scaffold0068 (1 HSPs)
scaffold0068 (7-46)||(29377-29416)


Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 71 - 383
Target Start/End: Original strand, 31603436 - 31603748
Alignment:
Q  71 acaaaatccgacatcaacattgtgtgttcgtaaagttttcggactgttatattacttttctatctcttcaagtttttgtctcaccgttggtccgacgtcg 170  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31603436 acaaaatccgacatcaacattgtgtgttcgtaaagttttccgactgttatattacttttctatctcttcaagtttttgtctcaccgctggtccgacgtcg 31603535  T
Q  171 atacttctttgtattcacatgtcggttttcgtgagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatgg 270  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31603536 atacttctttgtatacacatgtcggttttcgtgagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatgg 31603635  T
Q  271 tcaaggtttcttgccttgtcatgataccggaatctagacgcaaatcatgataaccaatccctgatctcttttgctgctgaaccaccaaaacagaaccatc 370  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31603636 tcaaggtttcttgccttgtcatgataccggaatctagacgcaaatcatgataaccaatccctgatctcttttgctgctgaaccaccaaaacagaaccatc 31603735  T
Q  371 aaaagtataatct 383  Q
    ||||||| |||||    
T  31603736 aaaagtagaatct 31603748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 138; E-Value: 5e-72
Query Start/End: Original strand, 107 - 383
Target Start/End: Original strand, 31593216 - 31593496
Alignment:
Q  107 tttcggactgttatattactttt-ctatctcttcaagtt-tttgtct--caccgttggtccgacgtcgatacttctttgtattcacatgtcggttttcgt 202  Q
    |||| |||| ||||||||||||| ||||||||| ||||| ||| |||  ||||||||||||||| || | ||||||||||||   | |   || ||||||    
T  31593216 tttctgactattatattactttttctatctcttgaagttctttttcttacaccgttggtccgacatccacacttctttgtataggcgtaatggctttcgt 31593315  T
Q  203 gagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatggtcaaggtttcttgccttgtcatgataccggaa 302  Q
      ||||||||||||||||||||||||| ||||||||||||| ||||||| |||||||||| |||||||||||| ||||||| ||||||| || |||||||    
T  31593316 ttgtctaaatagcacaactgattaaaccattggccaaacctttctatcatgaggtacttccacaatggtcaagctttcttgtcttgtcacgaaaccggaa 31593415  T
Q  303 tctagacgcaaatcatgataaccaatccctgatctcttttgctgctgaaccaccaaaacagaaccatcaaaagtataatct 383  Q
    |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  31593416 tctagatgcaaatcatgataaccagtccctgacctcttttgctgctgaaccaccaaaacagaaccatcaaaagtagaatct 31593496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 190 - 383
Target Start/End: Original strand, 31562416 - 31562612
Alignment:
Q  190 tgtcggttttcgtgagtctaaatagcacaactgattaaacaattggccaaacctatctatcacgaggtacttcgacaatggtcaaggtttcttgccttgt 289  Q
    |||||||||| ||| ||||||||| || |   ||||||| |||||||| ||||| |||||||| ||||||||| |||||||| | |||||||||| ||||    
T  31562416 tgtcggtttttgtgtgtctaaataacatagtggattaaataattggccgaacctttctatcacaaggtacttccacaatggttacggtttcttgctttgt 31562515  T
Q  290 c---atgataccggaatctagacgcaaatcatgataaccaatccctgatctcttttgctgctgaaccaccaaaacagaaccatcaaaagtataatct 383  Q
        |||||||| |||||||||||||||||||||||||||| ||||||  ||||||| ||||||||||||||||||||||||| ||||||| |||||    
T  31562516 tttgatgataccagaatctagacgcaaatcatgataaccaacccctgacttcttttgttgctgaaccaccaaaacagaaccattaaaagtagaatct 31562612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 221 - 383
Target Start/End: Original strand, 31577801 - 31577966
Alignment:
Q  221 tgattaaacaattggccaaacctatctatcacgaggtacttcgacaatggtcaaggtttcttgccttgtcatga---taccggaatctagacgcaaatca 317  Q
    |||| ||| |||||||| ||| | |||||||  ||||||||| |||||||| |  | ||||||| ||||  |||   ||||  ||||||||  |||||||    
T  31577801 tgatcaaataattggccgaacgtttctatcattaggtacttccacaatggttacaggttcttgctttgttttgacgataccacaatctagattcaaatca 31577900  T
Q  318 tgataaccaatccctgatctcttttgctgctgaaccaccaaaacagaaccatcaaaagtataatct 383  Q
    |||||||||| ||||||  ||||||| ||||||| ||||| ||||||||||||||||||| |||||    
T  31577901 tgataaccaacccctgacttcttttgttgctgaatcaccagaacagaaccatcaaaagtagaatct 31577966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 15552482 - 15552443
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  15552482 agagcagccctccaatccactatatgatgagtttcgttac 15552443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 31179413 - 31179452
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  31179413 agagcagccctccaatccactatatgatgagtttcgttac 31179452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 3373179 - 3373218
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  3373179 agagcaaccctccaatccactatatgatgagtttcgttac 3373218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 21684494 - 21684533
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  21684494 agagcagccctccgatccactatatgatgagtattgttac 21684533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 31542971 - 31542940
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  31542971 agagcagccctccaatccactatatgatgagt 31542940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 31545317 - 31545286
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  31545317 agagcagccctccaatccactatatgatgagt 31545286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0267 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0267
Description:

Target: scaffold0267; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 287 - 248
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  287 agagcagccctccaatccactatatgatgagtttcgttac 248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 18811000 - 18810961
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18811000 agagcagccctccaatccactatatgatgagtattgttac 18810961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 18813174 - 18813135
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  18813174 agagcagccctccaatccactatatgatgagtattgttac 18813135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 24873223 - 24873262
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  24873223 agagcagccctccaatccactatatgatgagtttcgttac 24873262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 43079895 - 43079856
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  43079895 agagcagccctccaatccactatatgatgagtttcgttac 43079856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 43082266 - 43082227
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  43082266 agagcagccctccaatccactatatgatgagtttcgttac 43082227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 27827278 - 27827239
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  27827278 agagcagccctccgatccactatatgatgagtattgttac 27827239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 27829589 - 27829550
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  27829589 agagcagccctccgatccactatatgatgagtattgttac 27829550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 7349315 - 7349354
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  7349315 agagcagccctccaatccactatatgatgagtttcgttac 7349354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 7351694 - 7351733
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  7351694 agagcagccctccaatccactatatgatgagtttcgttac 7351733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 1046967 - 1046998
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  1046967 agagcagccctccaatccactatatgatgagt 1046998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 1049338 - 1049369
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  1049338 agagcagccctccaatccactatatgatgagt 1049369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 3035971 - 3035940
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  3035971 agagcagccctccaatccactatatgatgagt 3035940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 20297609 - 20297578
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  20297609 agagcagccctccaatccactatatgatgagt 20297578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 12195557 - 12195596
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  12195557 agagcagccctccaatccactatatgatgagtttcgttac 12195596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 4816273 - 4816304
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  4816273 agagcagccctccaatccactatatgatgagt 4816304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 5273258 - 5273297
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||| ||||||||| |||||    
T  5273258 agagcagccctccaatccactataagatgagtttcgttac 5273297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 19704609 - 19704640
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  19704609 agagcagccctccaatccactatatgatgagt 19704640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 20915398 - 20915429
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  20915398 agagcagccctccaatccactatatgatgagt 20915429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 26932604 - 26932643
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||| ||||||||||||||||||||||||||| |||||    
T  26932604 agagcaaccctccaatccactatatgatgagtttcgttac 26932643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16931831 - 16931870
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16931831 agagcagccctccaatccactatatgatgagtttcgttac 16931870  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 16934185 - 16934224
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16934185 agagcagccctccaatccactatatgatgagtttcgttac 16934224  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 44599880 - 44599919
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  44599880 agagcagccctccaatccactatatgatgagtttcgttac 44599919  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 5198711 - 5198680
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  5198711 agagcagccctccaatccactatatgatgagt 5198680  T

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Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 6765135 - 6765104
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  6765135 agagcagccctccaatccactatatgatgagt 6765104  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 7941614 - 7941583
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  7941614 agagcagccctccaatccactatatgatgagt 7941583  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 9176516 - 9176547
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  9176516 agagcagccctccaatccactatatgatgagt 9176547  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 11008610 - 11008641
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  11008610 agagcagccctccaatccactatatgatgagt 11008641  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 18709206 - 18709245
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  18709206 agagcagtcctccaatccactatatgatgagtttcgttac 18709245  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Complemental strand, 18847444 - 18847413
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  18847444 agagcagccctccaatccactatatgatgagt 18847413  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 22132434 - 22132465
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  22132434 agagcagccctccaatccactatatgatgagt 22132465  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 22134659 - 22134690
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  22134659 agagcagccctccaatccactatatgatgagt 22134690  T

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Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 22780415 - 22780446
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  22780415 agagcagccctccaatccactatatgatgagt 22780446  T

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Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 22782780 - 22782811
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  22782780 agagcagccctccaatccactatatgatgagt 22782811  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 456124 - 456085
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  456124 agagcagccctccaatccactatatgatgagtttcgttac 456085  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 458501 - 458462
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  458501 agagcagccctccaatccactatatgatgagtttcgttac 458462  T

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Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 6063486 - 6063525
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  6063486 agagcagccctccaatccactatatgatgagtttcgttac 6063525  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 28413072 - 28413111
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  28413072 agagcagccctccaatccactatatgatgagtttcgttac 28413111  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 50494216 - 50494177
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  50494216 agagcagccctccaatccactatatgatgagtttcgttac 50494177  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 6065836 - 6065875
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  6065836 agagcagccatccaatccactatatgatgagtttcgttac 6065875  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 10621570 - 10621601
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  10621570 agagcagccctccaatccactatatgatgagt 10621601  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 38210587 - 38210548
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||| ||||||||||||||||||||||||| |||||    
T  38210587 agagcagctctccaatccactatatgatgagtttcgttac 38210548  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 35215628 - 35215667
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  35215628 agagcagccctccaatccactatatgatgagtttcgttac 35215667  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Original strand, 35218005 - 35218044
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  35218005 agagcagccctccaatccactatatgatgagtttcgttac 35218044  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 23452279 - 23452310
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  23452279 agagcagccctccaatccactatatgatgagt 23452310  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 42064727 - 42064688
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  42064727 agagcagccctccgatccactatatgatgagtattgttac 42064688  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 16226404 - 16226365
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16226404 agagcagccctccaatccactatatgatgagtttcgttac 16226365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 16231800 - 16231761
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  16231800 agagcagccctccaatccactatatgatgagtttcgttac 16231761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 47177599 - 47177560
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  47177599 agagcagccctccaatccactatatgatgagtttcgttac 47177560  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 47179950 - 47179911
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  47179950 agagcagccctccaatccactatatgatgagtttcgttac 47179911  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 9459461 - 9459492
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  9459461 agagcagccctccaatccactatatgatgagt 9459492  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 38
Target Start/End: Original strand, 9463288 - 9463319
Alignment:
Q  7 agagcagccctccaatccactatatgatgagt 38  Q
    ||||||||||||||||||||||||||||||||    
T  9463288 agagcagccctccaatccactatatgatgagt 9463319  T

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Target: scaffold0250 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0250
Description:

Target: scaffold0250; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 9 - 46
Target Start/End: Complemental strand, 3123 - 3086
Alignment:
Q  9 agcagccctccaatccactatatgatgagttttgttac 46  Q
    |||||||||||||||||||||||||||||||| |||||    
T  3123 agcagccctccaatccactatatgatgagtttcgttac 3086  T

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Target: scaffold0068 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 29416 - 29377
Alignment:
Q  7 agagcagccctccaatccactatatgatgagttttgttac 46  Q
    ||||||||||||| |||||||||||||||||| |||||||    
T  29416 agagcagccctccgatccactatatgatgagtattgttac 29377  T

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