View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_48 (Length: 378)
Name: NF1125_low_48
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_48 |
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Alignment Details
Target: chr4 (Bit Score: 347; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 8687120 - 8686754
Alignment:
| Q |
1 |
aatacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctgaggacttctagctagccacatctcgatcgattat |
100 |
Q |
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| T |
8687120 |
aatacttatgctggtttaattttattattgagtattttcatgcgttggttaaggttaaataatctgaggacttctagctagccacatctcgatcgattat |
8687021 |
T |
|
| Q |
101 |
tgtatattgctacataaaatcttcttttctatatattagaatataaagtcttcaacgagtgcagggaaaatatttagtcttcaccaccttcgtgtatttt |
200 |
Q |
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| T |
8687020 |
tgtatattgctacataaaatcttcttttctatatattagaatataaagtcttcaacgagtgcagggaaaatatttagtcttcactaccttcgtgtatttt |
8686921 |
T |
|
| Q |
201 |
gcatgaggtagtacatccaacaacattcccctcactctgtgatactttttatagatcttcctttgcacatgtgttagacacttcgtatctggcacaattc |
300 |
Q |
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| T |
8686920 |
gcaagaggtagcacatccaacaacattcccctcactctgtgatactttttatagatcttcctttgcacatgtgttagacacttcgtatctggcacaattc |
8686821 |
T |
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| Q |
301 |
cttcttcgtcaacttcaaacgtaacacattcttcaatagtgtcccatagctcatcatcaatgcctat |
367 |
Q |
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| T |
8686820 |
catcttcgtcaacttcaaacgtaacaccttcttcaatagtgtcccatagctcatcatcaatgcctat |
8686754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 8675352 - 8675423
Alignment:
| Q |
1 |
aatacttatgctggtttaattttat--tattgagtattttcatgcgttggttaaggttaaataatctgagga |
70 |
Q |
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|||| ||||| ||||||| |||||| ||| |||||||||| ||||||||||||||||||||| |||||||| |
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| T |
8675352 |
aatatttatgttggtttagttttatattatcgagtattttcgtgcgttggttaaggttaaatattctgagga |
8675423 |
T |
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