View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_49 (Length: 377)

Name: NF1125_low_49
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_49
NF1125_low_49
[»] chr7 (1 HSPs)
chr7 (79-377)||(6032403-6032701)


Alignment Details
Target: chr7 (Bit Score: 299; Significance: 1e-168; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 79 - 377
Target Start/End: Original strand, 6032403 - 6032701
Alignment:
Q  79 agtgagatgaagatgcaagaagatttgaaagaaaaatatcctgaaattgatcaaaatcaacaaatccttcatcaattgatgcctaatgaagatgaaactt 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6032403 agtgagatgaagatgcaagaagatttgaaagaaaaatatcctgaaattgatcaaaatcaacaaatccttcatcaattgatgcctaatgaagatgaaactt 6032502  T
Q  179 caaaatcacttcaaagagatgatatctttaacttcattgaggaatctattgtgattaagagaaagttgaagaaatcttcttctcatcattatcaacaaaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6032503 caaaatcacttcaaagagatgatatctttaacttcattgaggaatctattgtgattaagagaaagttgaagaaatcttcttctcatcattatcaacaaaa 6032602  T
Q  279 cactaatttgatccctaaggaagctagttttgatcatgactctccaatgttatcaccaaattgggatgctaataataataacaatgatgctgccactgg 377  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6032603 cactaatttgatccctaaggaagctagttttgatcatgactctccaatgttatcaccaaattgggatgctaataataataacaatgatgctgccactgg 6032701  T

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