View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_52 (Length: 354)
Name: NF1125_low_52
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_52 |
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Alignment Details
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 82 - 276
Target Start/End: Original strand, 7333523 - 7333717
Alignment:
| Q |
82 |
aacaaagggaaataccagagtctatgactcctacccgagataagtctccactccctatcacctcattacatactctctcctttaaccacctagagaatat |
181 |
Q |
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| T |
7333523 |
aacaaagggaaataccagagtctatgactcctacccgagataagtctccactccctatcacctcattacatactctctcctttaaccacctagagaatat |
7333622 |
T |
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| Q |
182 |
tcgtgccaccttctttttccagacatacactttccaaatagctggcctatgagggtccacaccgtatccacatgaaagtcaaatcaggcctatga |
276 |
Q |
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| T |
7333623 |
tcgtgccaccttctttttccagacataaactttccaaatagctggcctatgagggtccacaccgtatccacatgaaagtcaaatcaggcctatga |
7333717 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 190 - 255
Target Start/End: Complemental strand, 12427084 - 12427018
Alignment:
| Q |
190 |
ccttctttttccagacatacactttccaaatagctggcctatgagggtccacacc-gtatccacatg |
255 |
Q |
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| T |
12427084 |
ccttccttttcctgacatacactttccaaattgctgacctatgggggtcaacaccagtatccacatg |
12427018 |
T |
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