View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_55 (Length: 344)
Name: NF1125_low_55
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_55 |
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| [»] scaffold0740 (1 HSPs) |
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Alignment Details
Target: scaffold0740 (Bit Score: 201; Significance: 1e-109; HSPs: 1)
Name: scaffold0740
Description:
Target: scaffold0740; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 30 - 250
Target Start/End: Complemental strand, 2384 - 2164
Alignment:
| Q |
30 |
gtatgtaagtgggtatgtcaagccttgtgtataaccacatgattattcattgtgtaaattgtttttgtggatgaatagaggaagacattgaagaagaaga |
129 |
Q |
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| T |
2384 |
gtatgtaagtgggtatttcaagccttgtgtataaccacatgattattcattgtgtaaattgtttttgtggatgaataggggaagacattgaagaagaaga |
2285 |
T |
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| Q |
130 |
atggactgtttttggtggaaaggaagctttggttcaagaatcatttcaggataattgaaggatgggagctcttgtccctcatttggtggttcagccccac |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2284 |
atggactgtttttggtggaaaggaagctttggttcaagaatcatttcaggataattgaaggatgggagctcttgtccctcatttggtggttcagtcccac |
2185 |
T |
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| Q |
230 |
ttgaatagatgagttctctat |
250 |
Q |
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| T |
2184 |
ttgaataggtgaattctctat |
2164 |
T |
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Target: chr8 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 2683850 - 2683771
Alignment:
| Q |
259 |
aattcagttatgttatgatggagaaatctgagttacaagtttcagtttttgaatcaaaaatctgcactaatattgttgga |
338 |
Q |
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| T |
2683850 |
aattcaattatgttatgatggagaaaactgagttacaagtttcagttgttgaataaaaaatctgctctaatgtggttgga |
2683771 |
T |
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Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 338
Target Start/End: Original strand, 5479462 - 5479541
Alignment:
| Q |
259 |
aattcagttatgttatgatggagaaatctgagttacaagtttcagtttttgaatcaaaaatctgcactaatattgttgga |
338 |
Q |
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| T |
5479462 |
aattcaattatgttatgatggagaaaactgagttacaagtttcagttgttgaataaaaaatctgctctaatgtggttgga |
5479541 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 259 - 319
Target Start/End: Original strand, 1689437 - 1689497
Alignment:
| Q |
259 |
aattcagttatgttatgatggagaaatctgagttacaagtttcagtttttgaatcaaaaat |
319 |
Q |
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| T |
1689437 |
aattcaattatgttatgatggagaaaactgagttacaagtttcagttgttgaataaaaaat |
1689497 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 259 - 338
Target Start/End: Complemental strand, 45007275 - 45007196
Alignment:
| Q |
259 |
aattcagttatgttatgatggagaaatctgagttacaagtttcagtttttgaatcaaaaatctgcactaatattgttgga |
338 |
Q |
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| T |
45007275 |
aattcaattatgttatgatggagaaaactgagttacaagtttcagttgttgaataaaaaatctgctctaatgtggttgga |
45007196 |
T |
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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 264 - 329
Target Start/End: Original strand, 3736735 - 3736800
Alignment:
| Q |
264 |
agttatgttatgatggagaaatctgagttacaagtttcagtttttgaatcaaaaatctgcactaat |
329 |
Q |
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| T |
3736735 |
agttatgttatgactaagaaaactgagttacaagtttcagttattgaattaaacatctgcactaat |
3736800 |
T |
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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 338
Target Start/End: Original strand, 31112528 - 31112604
Alignment:
| Q |
264 |
agttatgttatgatggagaaatctgagttacaagtttcagtttttgaat--caaaaatctgcactaatattgttgga |
338 |
Q |
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| T |
31112528 |
agttatgttacgatggagaaaacagagttacaagttccagttgttgaataaaaaaaatctgcactaatgtggttgga |
31112604 |
T |
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