View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_57 (Length: 336)

Name: NF1125_low_57
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_57
NF1125_low_57
[»] chr1 (1 HSPs)
chr1 (18-304)||(17339086-17339364)
[»] chr6 (3 HSPs)
chr6 (129-164)||(29335598-29335633)
chr6 (129-172)||(34481437-34481480)
chr6 (121-169)||(3847603-3847651)
[»] chr4 (2 HSPs)
chr4 (131-172)||(47643958-47643999)
chr4 (129-165)||(34960180-34960216)
[»] chr2 (1 HSPs)
chr2 (129-169)||(8727729-8727769)


Alignment Details
Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 18 - 304
Target Start/End: Complemental strand, 17339364 - 17339086
Alignment:
Q  18 ggtggaatgaccgtactaccattaagtagtaataactcattaattcaataagattgatgactcattaatttgtttctttagtggtggttggggttcactc 117  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| ||  ||||| |    
T  17339364 ggtggaatgaccgtactaccattaagtaataataactcattaattcaataagattgatgactcattagtttgtttctttagcggtggtcggatttcaccc 17339265  T
Q  118 cataccttgtctatattatgcattgtttatactacctgagttaagcttatgaggatactcgttagtttattttgattttgtcggtaaggatttggttgat 217  Q
     | ||||||  ||||||||| |||||| |||| | |||||||||||||| ||||||| |||||        |||||||||||||||||||||||||||||    
T  17339264 aagaccttgcttatattatgtattgttcataccaactgagttaagcttacgaggatattcgtt--------ttgattttgtcggtaaggatttggttgat 17339173  T
Q  218 ccaaaaagatcgtagaatacttttgctatttaagatattgtacccccattatgagatctatcaatgaaattgcaatcattcctttat 304  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17339172 ccaaaaagatcgtagaatacttttgctatttaagatattgtacccccattatgagatctatcaatgaaattgcaatcattcctttat 17339086  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 164
Target Start/End: Original strand, 29335598 - 29335633
Alignment:
Q  129 tatattatgcattgtttatactacctgagttaagct 164  Q
    ||||||||||||||||||||||| ||||||||||||    
T  29335598 tatattatgcattgtttatactaactgagttaagct 29335633  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 34481437 - 34481480
Alignment:
Q  129 tatattatgcattgtttatactacctgagttaagcttatgagga 172  Q
    ||||| |||||||||| |||||| ||||||||||||||||||||    
T  34481437 tatataatgcattgttcatactaactgagttaagcttatgagga 34481480  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 121 - 169
Target Start/End: Complemental strand, 3847651 - 3847603
Alignment:
Q  121 accttgtctatattatgcattgtttatactacctgagttaagcttatga 169  Q
    ||||||| ||||||||||||| ||| | ||| |||||||||||||||||    
T  3847651 accttgtatatattatgcattattttttctaactgagttaagcttatga 3847603  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 47643958 - 47643999
Alignment:
Q  131 tattatgcattgtttatactacctgagttaagcttatgagga 172  Q
    ||||||||||||| ||||||| |||||||||||||| |||||    
T  47643958 tattatgcattgtctatactaactgagttaagcttacgagga 47643999  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 165
Target Start/End: Original strand, 34960180 - 34960216
Alignment:
Q  129 tatattatgcattgtttatactacctgagttaagctt 165  Q
    ||||||||||||||||||||| | |||||||||||||    
T  34960180 tatattatgcattgtttataccaactgagttaagctt 34960216  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 129 - 169
Target Start/End: Original strand, 8727729 - 8727769
Alignment:
Q  129 tatattatgcattgtttatactacctgagttaagcttatga 169  Q
    ||||||||||||||||| ||||| ||||| |||||||||||    
T  8727729 tatattatgcattgtttctactaactgagctaagcttatga 8727769  T

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