View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_6 (Length: 672)
Name: NF1125_low_6
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 133 - 575
Target Start/End: Complemental strand, 40962564 - 40962139
Alignment:
| Q |
133 |
atcaaactcagaaccttattgcgattgagcataactcccttatccatagccttcattgcgaagtattgaccagttccttctagctccaccagatgcacac |
232 |
Q |
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| T |
40962564 |
atcaaactcagaaccttattgcgattgagcataacacccttatccatagccttcattgcgaagtattgaccagttccttctagctccaccagatgcacac |
40962465 |
T |
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| Q |
233 |
tgaaagccaataacatatcatatcagtcccgaaggagtattccagtgaaatgtattataaaatctcaagctcacttgaattttcatctaagtagagacca |
332 |
Q |
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| T |
40962464 |
tgaaagccgataacatatcatatcagtcccgaaggagtattccagtgaaatgtattataaaatctcaagctcacttgaattttcatctaagtagagacca |
40962365 |
T |
|
| Q |
333 |
attcattgataaggcgtttatatattcacaagttccattaaggaaattgtagaatcactggaagtgacaatatcatggacatgtatgtagtttgtacttg |
432 |
Q |
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| T |
40962364 |
attcattgataaggcgtttatatattcacaagttccattaaggaaattgtagaattactagaagtgacaatatcatggacatgtatgtagtttgtacttg |
40962265 |
T |
|
| Q |
433 |
gaaaagagaactaaggagaaaaagagaaaaacaataaaccttccggtatctccagatcccaaaggtttaattggcctaaagtgctttaggcttatctgtt |
532 |
Q |
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| T |
40962264 |
gaaaagaga-----------------aaaaaaaataaaccttccggtatctccagatcccaaaggtttaattggcctaaagtgctttaggcttatctgtt |
40962182 |
T |
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| Q |
533 |
ctccattttcgatgatctgcaaaaccatagtgttgtctgtaac |
575 |
Q |
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| T |
40962181 |
ctccattttcgatgatctgcaaaaccatagtgttgtgtgtaac |
40962139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 493 - 560
Target Start/End: Complemental strand, 22797940 - 22797873
Alignment:
| Q |
493 |
aaaggtttaattggcctaaagtgctttaggcttatctgttctccattttcgatgatctgcaaaaccat |
560 |
Q |
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| T |
22797940 |
aaaggtttaattggcttaaaatgcttcaagcctatctgttctccactctccatgatctgcaaaaccat |
22797873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 145 - 235
Target Start/End: Complemental strand, 22798317 - 22798227
Alignment:
| Q |
145 |
accttattgcgattgagcataactcccttatccatagccttcattgcgaagtattgaccagttccttctagctccaccagatgcacactga |
235 |
Q |
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|||||||| || ||||||||||| |||| |||||||||||||| || || | |||| ||||||| ||||||||| ||||| ||||||| |
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| T |
22798317 |
accttattacggttgagcataacagccttctccatagccttcatggcaaaatgttgatcagttccacatagctccacaagatggacactga |
22798227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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