View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_61 (Length: 331)

Name: NF1125_low_61
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_61
NF1125_low_61
[»] chr4 (17 HSPs)
chr4 (1-153)||(46015841-46015993)
chr4 (1-153)||(46428203-46428355)
chr4 (1-150)||(46027886-46028034)
chr4 (154-209)||(46016023-46016078)
chr4 (158-212)||(46428384-46428438)
chr4 (2-144)||(46021197-46021341)
chr4 (56-144)||(46303817-46303905)
chr4 (57-153)||(46015351-46015446)
chr4 (57-153)||(46020583-46020678)
chr4 (54-128)||(46020784-46020861)
chr4 (154-209)||(46020921-46020976)
chr4 (281-320)||(46428507-46428546)
chr4 (57-153)||(46246255-46246350)
chr4 (87-136)||(41074446-41074495)
chr4 (281-314)||(46021029-46021062)
chr4 (156-213)||(46028078-46028135)
chr4 (68-144)||(14320569-14320645)
[»] chr1 (6 HSPs)
chr1 (7-115)||(3804121-3804229)
chr1 (22-139)||(3801740-3801859)
chr1 (37-153)||(3802212-3802327)
chr1 (156-209)||(50668628-50668681)
chr1 (68-131)||(50668040-50668103)
chr1 (33-153)||(3802651-3802767)
[»] chr8 (2 HSPs)
chr8 (76-153)||(4522939-4523015)
chr8 (59-144)||(4525320-4525403)
[»] scaffold0079 (1 HSPs)
scaffold0079 (74-153)||(7948-8026)
[»] scaffold0384 (1 HSPs)
scaffold0384 (76-153)||(5736-5812)
[»] chr3 (1 HSPs)
chr3 (48-150)||(52806365-52806467)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 1e-78; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 46015841 - 46015993
Alignment:
Q  1 ttttactcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgac 100  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015841 ttttactcaatgctgtaatgatgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgac 46015940  T
Q  101 tttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46015941 tttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 46015993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 46428203 - 46428355
Alignment:
Q  1 ttttactcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgac 100  Q
    |||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  46428203 ttttactcaatgctgtaatggtatattgatatgttctttgcagttaaattaatttgggttaacatgtacttcgtccaactgttatgatttacattttgac 46428302  T
Q  101 tttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||||||||||    
T  46428303 tttaaaactatgcgaagatacaattatttttgctttcctgtttttatgaaaat 46428355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 1 - 150
Target Start/End: Original strand, 46027886 - 46028034
Alignment:
Q  1 ttttactcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgac 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| || |||||    
T  46027886 ttttactcaatgctgtaatggtgtattgatatgttctttgcagttaaattaatttaggttaacatgtacttcgtccatctgttatgatttaaattttgac 46027985  T
Q  101 tttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaa 150  Q
    ||| |||||||||||| |||||||||||||||||||||||||||||||||    
T  46027986 ttt-aaactatgtgaagatacaattatttttgctttcctgtttttatgaa 46028034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 46016023 - 46016078
Alignment:
Q  154 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 209  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46016023 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 46016078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 158 - 212
Target Start/End: Original strand, 46428384 - 46428438
Alignment:
Q  158 tgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46428384 tgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatt 46428438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 2 - 144
Target Start/End: Original strand, 46021197 - 46021341
Alignment:
Q  2 tttactcaatgctgtaatggtgtattgat----atgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatctt 97  Q
    ||||||||||||||||||| |||||| ||    || || |||||||||| ||||||||| ||||||||| ||| | |||||||||||||||||| |  ||    
T  46021197 tttactcaatgctgtaatgttgtattaattaatatattatttgcagttaaattaatttgagttaacatgcactccatccatctgttatgatttaga--tt 46021294  T
Q  98 gactttaaaactatgtgaacatacaattatttttgctttcctgtttt 144  Q
    ||||||||||  || |||| | |||||| ||| ||||||||||||||    
T  46021295 gactttaaaatcatttgaagacacaattctttctgctttcctgtttt 46021341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 56 - 144
Target Start/End: Complemental strand, 46303905 - 46303817
Alignment:
Q  56 gggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 144  Q
    ||||||||||| | ||| |||||||||||||||||| || ||||||||||||||||||||| | |||||| ||| ||||||||| ||||    
T  46303905 gggttaacatgcatttcatccatctgttatgatttagattttgactttaaaactatgtgaagacacaattctttatgctttcctatttt 46303817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 46015351 - 46015446
Alignment:
Q  57 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    |||||||||| ||||| ||||||||||||||| ||||| |||| |||||||| ||||||| ||| |||| || ||| ||||||| ||||||||||||    
T  46015351 ggttaacatgcacttcatccatctgttatgatgtacattttgagtttaaaaccatgtgaagataaaattcttgttgttttcctg-ttttatgaaaat 46015446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 57 - 153
Target Start/End: Original strand, 46020583 - 46020678
Alignment:
Q  57 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    |||||||||| ||||  ||||||||||||||||||| |  ||| |||||||| ||||||| |||||||| |||||| |||||| |||||||||||||    
T  46020583 ggttaacatgcacttaatccatctgttatgatttaccttatgagtttaaaaccatgtgaagatacaattctttttgttttcct-tttttatgaaaat 46020678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 54 - 128
Target Start/End: Original strand, 46020784 - 46020861
Alignment:
Q  54 ttgggttaacatgtacttcgt---ccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatt 128  Q
    ||||||||||||||||| | |   |||||||||||||||||| | ||||||||||||||||||||| |||||||||||    
T  46020784 ttgggttaacatgtactacttgatccatctgttatgatttacgttttgactttaaaactatgtgaagatacaattatt 46020861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 46020921 - 46020976
Alignment:
Q  154 catatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 209  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||    
T  46020921 catatgtctatcttgccgttgttgccagacttgggaaattcagcccatttcattct 46020976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 281 - 320
Target Start/End: Original strand, 46428507 - 46428546
Alignment:
Q  281 ttaacagtttcagccatattaaaataacctcacccttcat 320  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  46428507 ttaacagtttcagccatattaaaataacctcacccttcat 46428546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 57 - 153
Target Start/End: Complemental strand, 46246350 - 46246255
Alignment:
Q  57 ggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    |||||||||| ||||  ||||||||||||||||||| |  | | ||||||||  |||||| |||||||| |||||  |||||| |||||||||||||    
T  46246350 ggttaacatgcacttaatccatctgttatgatttaccttataagtttaaaaccttgtgaagatacaattcttttttttttcct-tttttatgaaaat 46246255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 87 - 136
Target Start/End: Original strand, 41074446 - 41074495
Alignment:
Q  87 atttacatcttgactttaaaactatgtgaacatacaattatttttgcttt 136  Q
    ||||| || ||||||||||||| ||||||| |||||||| ||||||||||    
T  41074446 atttagattttgactttaaaaccatgtgaagatacaattctttttgcttt 41074495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 314
Target Start/End: Original strand, 46021029 - 46021062
Alignment:
Q  281 ttaacagtttcagccatattaaaataacctcacc 314  Q
    |||||| |||||||||||||||||||||||||||    
T  46021029 ttaacactttcagccatattaaaataacctcacc 46021062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 213
Target Start/End: Original strand, 46028078 - 46028135
Alignment:
Q  156 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattctatta 213  Q
    ||||||||| |||| || |||||||  |||| |||||| |||||||||||||||||||    
T  46028078 tatgtttattttgctatggttgccatacttgtgaaatttagcccatttcattctatta 46028135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 68 - 144
Target Start/End: Original strand, 14320569 - 14320645
Alignment:
Q  68 acttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 144  Q
    ||||| ||||| ||| |||||||| || || ||| || ||| ||||||| ||||||||  |||||||||||||||||    
T  14320569 acttcatccatttgtcatgatttagatattaactgtagaaccatgtgaagatacaattcattttgctttcctgtttt 14320645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 115
Target Start/End: Complemental strand, 3804229 - 3804121
Alignment:
Q  7 tcaatgctgtaatggtgtattgatatgttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaa 106  Q
    |||||| ||| ||| |||||| |||||||||||||  | |  ||| |||||||||||||| ||||| |||||||||||||||||| || |||||||||||    
T  3804229 tcaatgttgtgatgttgtattaatatgttctttgctatgaagttagtttgggttaacatgcacttcatccatctgttatgatttaaattttgactttaaa 3804130  T
Q  107 actatgtga 115  Q
    || ||||||    
T  3804129 accatgtga 3804121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 139
Target Start/End: Complemental strand, 3801859 - 3801740
Alignment:
Q  22 tgtattgatatgttctttgcagttatattaatttgggtt--aacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacat 119  Q
    |||||| ||| |||||||||||| | |||| |||||| |  |||||| | ||| |||||||||||||||||| || ||||||||||||| ||||||| |     
T  3801859 tgtattaatacgttctttgcagtgaaattagtttggggttaaacatgcatttcatccatctgttatgatttagattttgactttaaaaccatgtgaagac 3801760  T
Q  120 acaattatttttgctttcct 139  Q
    |||||| ||| |||||||||    
T  3801759 acaattctttatgctttcct 3801740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 37 - 153
Target Start/End: Complemental strand, 3802327 - 3802212
Alignment:
Q  37 tttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgcttt 136  Q
    ||||| |||| ||||||||||  ||| ||| | ||| | ||| |||||||||||| || | ||||||||||| |||||||  |||||||| |||||||||    
T  3802327 tttgcggttaaattaatttggcgtaatatgcatttctttcatatgttatgatttagatttcgactttaaaaccatgtgaagctacaattagttttgcttt 3802228  T
Q  137 cctgtttttatgaaaat 153  Q
    |||  ||||||||||||    
T  3802227 cct-attttatgaaaat 3802212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 209
Target Start/End: Original strand, 50668628 - 50668681
Alignment:
Q  156 tatgtttatcttgccattgttgccaggcttgggaaattcagcccatttcattct 209  Q
    |||||||||||||| ||||||| ||| ||||| ||||| |||||||||||||||    
T  50668628 tatgtttatcttgctattgttgtcagacttggaaaattgagcccatttcattct 50668681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 68 - 131
Target Start/End: Original strand, 50668040 - 50668103
Alignment:
Q  68 acttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattattttt 131  Q
    ||||||||||| ||| |||||||| || ||||||||| ||| ||||||| |||||||| |||||    
T  50668040 acttcgtccatatgtcatgatttaaattttgactttagaaccatgtgaagatacaatttttttt 50668103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 153
Target Start/End: Complemental strand, 3802767 - 3802651
Alignment:
Q  33 gttctttgcagttatattaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttg 132  Q
    ||||||||||  | |||||||||||| || |||| ||||| ||||| ||||||   ||| || ||||||||||||  ||||||| ||||||||  |||||    
T  3802767 gttctttgcacatgtattaatttgggctagcatgcacttcttccatttgttat---ttagattttgactttaaaatcatgtgaagatacaattcgttttg 3802671  T
Q  133 ctttcctgtttttatgaaaat 153  Q
     ||||||  ||||||||||||    
T  3802670 ttttcct-attttatgaaaat 3802651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 4523015 - 4522939
Alignment:
Q  76 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    |||||||||||||||| || ||||||||||||| ||||||| | |||||| |||||||||||||| ||||||||||||    
T  4523015 catctgttatgatttagattttgactttaaaaccatgtgaagacacaattctttttgctttcctg-ttttatgaaaat 4522939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 144
Target Start/End: Complemental strand, 4525403 - 4525320
Alignment:
Q  59 ttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttt 144  Q
    |||| ||| ||||| ||||||||||||||| ||  | ||||||||||||| ||||||  | |||||| ||||||||||| ||||||    
T  4525403 ttaaaatgcacttcatccatctgttatgatctaggttttgactttaaaaccatgtga--agacaattctttttgctttcttgtttt 4525320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 8026 - 7948
Alignment:
Q  74 tccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    ||||||| ||||||||||||| ||||||||| |||| |||| | |||||||| |||||| |||| || ||||||||||||    
T  8026 tccatctcttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaat 7948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 76 - 153
Target Start/End: Complemental strand, 5812 - 5736
Alignment:
Q  76 catctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttatgaaaat 153  Q
    ||||| ||||||||||||| ||||||||| |||| |||| | |||||||| |||||| |||| || ||||||||||||    
T  5812 catctcttatgatttacatgttgactttagaactttgtgtagatacaattctttttgttttcttg-ttttatgaaaat 5736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 150
Target Start/End: Complemental strand, 52806467 - 52806365
Alignment:
Q  48 attaatttgggttaacatgtacttcgtccatctgttatgatttacatcttgactttaaaactatgtgaacatacaattatttttgctttcctgtttttat 147  Q
    ||||| |||||||||| || | | | ||||||| | | |||||| || ||||||||| ||| ||||||| || ||||| ||||| ||||| |||||||||    
T  52806467 attaacttgggttaacttgcattccttccatctttcacgatttagattttgactttagaacaatgtgaagatgcaattcttttttctttcttgtttttat 52806368  T
Q  148 gaa 150  Q
    |||    
T  52806367 gaa 52806365  T

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