View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1125_low_64 (Length: 325)
Name: NF1125_low_64
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_64 |
 | |
|
| [»] scaffold0531 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0531 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 3190 - 3473
Alignment:
| Q |
14 |
aggcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgta |
113 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||| ||||| ||| |||| ||||||||||||||||||||||| |
|
|
| T |
3190 |
aggcaaagatcataatgaaatatgtcaatttgatatttttgcaacttggacacactgtattgtggaactttcgcagtgatgcacctccggtgaccatgta |
3289 |
T |
|
| Q |
114 |
gacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatcta |
213 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
3290 |
aacaatgttcaccccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtaccta |
3389 |
T |
|
| Q |
214 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagt |
297 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3390 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagt |
3473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 200; Significance: 1e-109; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 14 - 297
Target Start/End: Complemental strand, 8032142 - 8031859
Alignment:
| Q |
14 |
aggcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgta |
113 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||| |||||| |||| ||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
8032142 |
aggcaaagatcataatgaaataggtcaatttgatatttttgcaacttgaacacactgtattgtggaacttccgcaatgatgcacctccggtgaccatgta |
8032043 |
T |
|
| Q |
114 |
gacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatcta |
213 |
Q |
| |
|
|||||||| | ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||| || | ||||||||||||| |
|
|
| T |
8032042 |
gacaatgtcgcccccaacttctactataagttgttgaggaaccacaatataaaggcctaacttttcgccaaacgcatgttgacctaattcatggtatcta |
8031943 |
T |
|
| Q |
214 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagt |
297 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |
|
|
| T |
8031942 |
tcaaaacgttttcccggaatcatttcatgcatctcaaccatttgccacaatgtatacagagtgatggtccatgataagagaagt |
8031859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 16 - 287
Target Start/End: Original strand, 7979237 - 7979508
Alignment:
| Q |
16 |
gcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgtaga |
115 |
Q |
| |
|
||||| ||||| |||||| | ||||| || || |||||||| ||||||||||| |||| |||| ||| |||| |||| || || |||||||| || | |
|
|
| T |
7979237 |
gcaaatatcatgatgaaataggtcaactttatctttttgcagcttggacacacaatatcatggaacttttgcaatgatgttcccccagtgaccatataaa |
7979336 |
T |
|
| Q |
116 |
caatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatctatc |
215 |
Q |
| |
|
||||||| || |||| |||||| ||||||||||||||||||||||||||||| ||||| |||| ||||| || ||||| || | ||||||||||||||| |
|
|
| T |
7979337 |
caatgttaacaccaatttctaccacaagttgttgaggcaccacaatataaagacctaattttttcccaaaagcatgttgacctaattcatggtatctatc |
7979436 |
T |
|
| Q |
216 |
aaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatga |
287 |
Q |
| |
|
||| |||||||| |||||||||||||||||||||||||||||||| | ||| || | |||||||||||||| |
|
|
| T |
7979437 |
aaagcgttttcccggaaccatttcatgcatctcaaccatttgccaaagtgtgtagaatgtgatgatccatga |
7979508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 287
Target Start/End: Original strand, 7971667 - 7971940
Alignment:
| Q |
14 |
aggcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgta |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||| || |||| ||| | || |||| ||||||||||||||||||||||| |
|
|
| T |
7971667 |
aggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgta |
7971766 |
T |
|
| Q |
114 |
gacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatcta |
213 |
Q |
| |
|
|||||||| | || || | ||| |||||||||||||||| |||||| | | ||||||||||| ||||| || ||||| || | ||||| ||| || |
|
|
| T |
7971767 |
gacaatgtccgacccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgta |
7971866 |
T |
|
| Q |
214 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatga |
287 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
7971867 |
tcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatga |
7971940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 14 - 287
Target Start/End: Complemental strand, 8042021 - 8041748
Alignment:
| Q |
14 |
aggcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgta |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||| || |||| ||| | || |||| ||||||||||||||||||||||| |
|
|
| T |
8042021 |
aggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacagactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgta |
8041922 |
T |
|
| Q |
114 |
gacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatcta |
213 |
Q |
| |
|
|||||||| | || || | ||| |||||||||||||||| |||||| | | ||||||||||| ||||| || ||||| || | ||||| ||| || |
|
|
| T |
8041921 |
gacaatgtccgacccgacctgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaaagcatgttgccctaattcattatatgta |
8041822 |
T |
|
| Q |
214 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatga |
287 |
Q |
| |
|
|||| ||||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||| |
|
|
| T |
8041821 |
tcaagacgttttcctggaaccatctcatgcatctcaaccatttgccacaaggtgtacagtgtgatgatccatga |
8041748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 14 - 297
Target Start/End: Original strand, 41382066 - 41382349
Alignment:
| Q |
14 |
aggcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgta |
113 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||| || |||| ||| | || |||| ||||||||||||||||||||||| |
|
|
| T |
41382066 |
aggcaaagatcataatgaaaaagctcaatttgattggtttgcaacttggacaaactgtattgtgaaatttttgcaatgatgcacctccggtgaccatgta |
41382165 |
T |
|
| Q |
114 |
gacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatcta |
213 |
Q |
| |
|
|||||||| ||| ||||||| ||| |||||||||||||||| |||||| | | ||||||||||| |||||||| ||||| |||| ||||| ||| || |
|
|
| T |
41382166 |
gacaatgtccaccccaacttgtaccacaagttgttgaggcatcacaatccacaaccctaacttttcaccaaacgcatgttggcccaattcattatatgta |
41382265 |
T |
|
| Q |
214 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagataagt |
297 |
Q |
| |
|
|||| ||||||||| |||||||| ||||||||||||||||||||||||| || || ||||||||||||||||| | ||||||| |
|
|
| T |
41382266 |
tcaagacgttttcccggaaccatctcatgcatctcaaccatttgccacagggtgtagagagtgatgatccatgaaaggataagt |
41382349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 43853219 - 43853128
Alignment:
| Q |
202 |
tcatggtatctatcaaaacgttttccaggaaccatttcatgcatctcaaccatttgccacaatgtatacagagtgatgatccatgataagat |
293 |
Q |
| |
|
|||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||||| | || || || ||||| |||||||||||||| |
|
|
| T |
43853219 |
tcatggtacctatcaaaccgttttcctggaaccatttcatgcatttcaaccatttgccatagagtgtagagggtgattatccatgataagat |
43853128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 14198632 - 14198878
Alignment:
| Q |
14 |
aggcaaagatcataatgaaaaacgtcaatttgatatttttgcaacttggacacacggtatcgtggaccttccgcaaagatgcacctccggtgaccatgta |
113 |
Q |
| |
|
||||||| ||||| || ||| | ||||||||||| ||||||||| | |||||||||||| || | |||| |||||||| |||||||| |||||||| |
|
|
| T |
14198632 |
aggcaaaaatcattataaaataagtcaatttgatttttttgcaatcggaacacacggtatcatgaaacttctgcaaagattttcctccggttaccatgta |
14198731 |
T |
|
| Q |
114 |
gacaatgttcactccaacttctactacaagttgttgaggcaccacaatataaaggcctaacttttcgccaaacgcgtgttgtcccagttcatggtatcta |
213 |
Q |
| |
|
||||||||| || || ||||| || | ||||||||| ||||| |||||||| || || |||||||| ||||| || | ||| ||||||||||| |||||| |
|
|
| T |
14198732 |
gacaatgttaacgccgacttcaacaataagttgttgtggcacaacaatatacagacccaacttttcaccaaaagcatattgacccagttcatgatatcta |
14198831 |
T |
|
| Q |
214 |
tcaaaacgttttccaggaaccatttcatgcatctcaaccatttgcca |
260 |
Q |
| |
|
|| |||||||| || || ||||||||||||||||||||||||||||| |
|
|
| T |
14198832 |
tcgaaacgtttcccgggtaccatttcatgcatctcaaccatttgcca |
14198878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 223 - 260
Target Start/End: Original strand, 38827416 - 38827453
Alignment:
| Q |
223 |
tttccaggaaccatttcatgcatctcaaccatttgcca |
260 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||| |
|
|
| T |
38827416 |
tttccgggaactatttcatgcatctcaaccatttgcca |
38827453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University