View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_7 (Length: 613)
Name: NF1125_low_7
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_7 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 324; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 265 - 613
Target Start/End: Complemental strand, 10970757 - 10970407
Alignment:
| Q |
265 |
ctaaattctaatgaaaattgattgctcaattagatttcatgagatcatgttaatctatgcattgaatttcattgaagccttatttgttaagggtttggat |
364 |
Q |
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| T |
10970757 |
ctaaattctaatggaaattgattgctcaattagatttcatgagatcatgttaatcaatgcattgaatttcattgaagccttatttgttaagggtttggat |
10970658 |
T |
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| Q |
365 |
tttgtgcagtgatgtggtcatggatctcgactataagatgaagattagacttgtattatgattttaccaaatccactttaaaatatacatctcgtaatac |
464 |
Q |
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| T |
10970657 |
tttgtgcagtgatgtggtcatggatctcgactataagatgaagattagacttgtattatgattttaccaaatccactttaaaatatacatctcgtaatac |
10970558 |
T |
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| Q |
465 |
aagtcatctgatcttcaattaacagttgggatctc--aactgcatgcttttcctgactgtgtagaatctagaatcgctaatgtaattgaatacttgaaac |
562 |
Q |
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| T |
10970557 |
aagtcatctgatcttcaattaacagttgggatctcttgactgcatgcttttcctgactgtgtagaatctagaatcgctaatgtaattgaatacttgaaac |
10970458 |
T |
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| Q |
563 |
atctttagtactgaaatggaaatttatatgaacaaatacatatgctgcttc |
613 |
Q |
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| T |
10970457 |
atctttagtactgaaatggaaatttatatgaacaaatacctatgctgcttc |
10970407 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 30 - 198
Target Start/End: Complemental strand, 10970993 - 10970825
Alignment:
| Q |
30 |
ctatgctacgaagttgttcgtcaataattctgtagtctgtgtgtttgtgtttttctgtgttcatggagtgtaatgcggtgtcattttttcgaatttgatg |
129 |
Q |
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| T |
10970993 |
ctatgctacgaagttgttcgtcaataattctgtagtctgtgtgtttgtgtttttctgtgttcatggagtgtaatgcggtgtcattttttcgaatttgatg |
10970894 |
T |
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| Q |
130 |
ttgtgattgcagcatttgagaagcttggacttgattgtgcgagttggaatgaacctgtctatacagatc |
198 |
Q |
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| T |
10970893 |
ttgtgattgcagcatttgagaagcttggacttgattgtgcgagttggaatgaacctgtctatacagatc |
10970825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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