View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_74 (Length: 297)
Name: NF1125_low_74
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 25 - 218
Target Start/End: Complemental strand, 32614864 - 32614671
Alignment:
| Q |
25 |
atttattctgttgagaaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcctcagctaggatcttttgtagagtttgc |
124 |
Q |
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| T |
32614864 |
atttattttgttgataaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcctcagttaggatcttttgtagagtttgc |
32614765 |
T |
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| Q |
125 |
ttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatgtattccagtcttgttttctctatctgaggtttaaagagctgcatat |
218 |
Q |
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| T |
32614764 |
ttttcaacacgttggaaaattcttaaaattaaatcatcatgctttatgtattccagtcttgttttctctatctgaggtttaaagagctgcatat |
32614671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 35 - 215
Target Start/End: Complemental strand, 32633481 - 32633301
Alignment:
| Q |
35 |
ttgagaaatgttccatgaaatctgacttacccatttatggcagctacattaggagttccatcctcagctaggatcttttgtagagtttgcttttcaacac |
134 |
Q |
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||||||||||||||||||||| ||||| ||| |||||||||| |||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||| |
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| T |
32633481 |
ttgagaaatgttccatgaaatatgactcaccgatttatggcatctacatcaggagttccatcctcagttaggatcgtttgtagagtttgcttttcaacac |
32633382 |
T |
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| Q |
135 |
gttggaaaattcttaaaattaaatcatcatgctttatgtattccagtcttgttttctctatctgaggtttaaagagctgca |
215 |
Q |
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||| || ||||||||||| || |||||||| ||||||||||| | ||||||||||||||||||||||||||||| ||||| |
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| T |
32633381 |
gttcaaagattcttaaaatcaattcatcatgttttatgtattctaatcttgttttctctatctgaggtttaaagatctgca |
32633301 |
T |
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