View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1125_low_77 (Length: 293)

Name: NF1125_low_77
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1125_low_77
NF1125_low_77
[»] chr8 (9 HSPs)
chr8 (1-264)||(24726595-24726858)
chr8 (165-253)||(43615389-43615477)
chr8 (166-253)||(16578875-16578962)
chr8 (192-250)||(2098510-2098568)
chr8 (171-243)||(5616870-5616942)
chr8 (166-250)||(20093391-20093474)
chr8 (172-239)||(11082015-11082082)
chr8 (164-250)||(20242661-20242747)
chr8 (164-250)||(20250413-20250499)
[»] scaffold0003 (1 HSPs)
scaffold0003 (8-121)||(105850-105964)
[»] chr1 (7 HSPs)
chr1 (157-253)||(2071614-2071710)
chr1 (157-253)||(2075144-2075240)
chr1 (171-253)||(3774414-3774496)
chr1 (157-251)||(15629431-15629525)
chr1 (186-249)||(11993562-11993625)
chr1 (200-252)||(9167904-9167956)
chr1 (157-253)||(11749687-11749780)
[»] chr4 (4 HSPs)
chr4 (171-250)||(24225986-24226065)
chr4 (176-253)||(54148206-54148283)
chr4 (157-253)||(16871582-16871678)
chr4 (170-250)||(24131745-24131825)
[»] chr2 (5 HSPs)
chr2 (165-253)||(1172856-1172943)
chr2 (176-243)||(42631690-42631757)
chr2 (165-253)||(29409163-29409251)
chr2 (166-249)||(38583584-38583667)
chr2 (165-250)||(32291089-32291174)
[»] chr7 (8 HSPs)
chr7 (157-253)||(17921283-17921379)
chr7 (171-250)||(11828004-11828083)
chr7 (165-253)||(21814358-21814446)
chr7 (166-253)||(48643552-48643639)
chr7 (164-250)||(44338984-44339070)
chr7 (177-248)||(3902177-3902248)
chr7 (157-243)||(15614334-15614419)
chr7 (194-226)||(3889714-3889746)
[»] chr3 (8 HSPs)
chr3 (157-253)||(814471-814567)
chr3 (176-264)||(2593196-2593284)
chr3 (165-253)||(16462898-16462986)
chr3 (157-253)||(814191-814287)
chr3 (171-243)||(22820957-22821029)
chr3 (208-253)||(50297391-50297436)
chr3 (165-253)||(46691540-46691628)
chr3 (176-227)||(17065511-17065562)
[»] chr6 (5 HSPs)
chr6 (157-253)||(10741703-10741799)
chr6 (169-253)||(9365197-9365281)
chr6 (192-244)||(28063117-28063169)
chr6 (194-253)||(8701734-8701792)
chr6 (159-250)||(18984431-18984522)
[»] chr5 (4 HSPs)
chr5 (158-253)||(9512389-9512484)
chr5 (171-250)||(27315186-27315265)
chr5 (187-250)||(24137532-24137595)
chr5 (187-253)||(40784089-40784155)
[»] scaffold0007 (1 HSPs)
scaffold0007 (158-253)||(14338-14433)


Alignment Details
Target: chr8 (Bit Score: 211; Significance: 1e-115; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 24726858 - 24726595
Alignment:
Q  1 ccctgattggacccctatccccaatgatgtctctctgcctgagaaaagctccgacgcggttgcccgtggctagccttagggtttccgcctctcctactct 100  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||    
T  24726858 ccctgattggacccctatccccaatgatgtctctctgccggagaaaagctccgacgcggttgcccgtggctagccctatggtttccgcctctcctactct 24726759  T
Q  101 caaaatctctcatcgctctttgtttatttatcattttagtttgttnnnnnnnnnnncttaagaccaatattttactatctaacacttaccttcaaactca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||    
T  24726758 caaaatctctcatcgctctttgtttatttatcattttagtttgttaaaaaaaaaaacttaagaccaatattttactatctaacacttaccttcaaactca 24726659  T
Q  201 tgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacatgataacataaa 264  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||    
T  24726658 tgatgcatcaacaaaaaatattgtgaatttgtcaaacaaaatacaaaaaacatgataacataaa 24726595  T

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Target: chr8; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 43615477 - 43615389
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||||||| |||||||||  || |||||||||||  ||| ||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  43615477 caatattttattatctaacatatatcttcaaactcacaatgaatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacat 43615389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 166 - 253
Target Start/End: Original strand, 16578875 - 16578962
Alignment:
Q  166 aatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||| |||| |||||||||| |||||||||| ||||| ||||| ||||||||||||| ||| ||||||||||||| ||| ||||||||    
T  16578875 aatactttattatctaacacataccttcaaattcatgttgcattaacaagaaacattatgagtttgtcaaacaaattacgaaaaacat 16578962  T

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Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 192 - 250
Target Start/End: Original strand, 2098510 - 2098568
Alignment:
Q  192 tcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||||| ||||||    
T  2098510 tcaaactcatgatgcatcaacaagaaatattgtgagtttgtcaaacaaaatataaaaaa 2098568  T

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Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Complemental strand, 5616942 - 5616870
Alignment:
Q  171 tttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaata 243  Q
    |||| ||||||| ||||||  ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  5616942 tttattatctaaaacttactctcaaactaatgatgcataaacaagaagcattgtgagtttgtcaaacaaaata 5616870  T

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Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 166 - 250
Target Start/End: Original strand, 20093391 - 20093474
Alignment:
Q  166 aatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    |||| |||| |||| |||||||| | |||||||||||| |||||||||| ||||||||| ||||||||||| ||||||| |||||    
T  20093391 aatactttattatcgaacacttaacctcaaactcatgaagcatcaacaa-aaacattgtaaatttgtcaaataaaatacgaaaaa 20093474  T

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Target: chr8; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 172 - 239
Target Start/End: Original strand, 11082015 - 11082082
Alignment:
Q  172 ttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaa 239  Q
    |||||||||||||||| || |||||||||||||||| ||||| ||||||| | || ||||||||||||    
T  11082015 ttactatctaacacttcccctcaaactcatgatgcaacaacatgaaacatcgagagtttgtcaaacaa 11082082  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 20242747 - 20242661
Alignment:
Q  164 ccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    ||||||||||| ||| |||||  |||| |||||||||  |||  ||||| |||| |||||||| ||||||||||||||||| |||||    
T  20242747 ccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaatacgaaaaa 20242661  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Original strand, 20250413 - 20250499
Alignment:
Q  164 ccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    ||||||||||| ||| |||||  |||| |||||||||  |||  ||||| |||| |||||||| ||||||||||||||||| |||||    
T  20250413 ccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaatacgaaaaa 20250499  T

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Target: scaffold0003 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 105964 - 105850
Alignment:
Q  8 tggacccctatcccca-atgatgtctctctgcctgagaaaagctccgacgcggttgcccgtggctagccttagggtttccgcctctcctactctcaaaat 106  Q
    |||||||||||||||  | ||||||||| |||| |||||||||||||||  |||||||| ||||||||  ||||||| ||||||||||||||||||||||    
T  105964 tggacccctatcccccgacgatgtctctttgccggagaaaagctccgacatggttgcccatggctagctctagggttcccgcctctcctactctcaaaat 105865  T
Q  107 ctctcatcgctcttt 121  Q
    |||||||||||||||    
T  105864 ctctcatcgctcttt 105850  T

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Target: chr1 (Bit Score: 57; Significance: 8e-24; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 2071614 - 2071710
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| ||||||||||| |||||||||| | || ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||| ||||||||    
T  2071614 cttaagcccaatattttattatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaacaaaatacgaaaaacat 2071710  T

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Target: chr1; HSP #2
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 2075144 - 2075240
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| ||||||||||| |||||||||| | || ||||||||||||||||| |||||||| |||| ||| ||||||||||||||||| ||||||||    
T  2075144 cttaagcccaatattttattatctaacacctgccctcaaactcatgatgcattaacaagaagcattctgagtttgtcaaacaaaatacgaaaaacat 2075240  T

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Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 171 - 253
Target Start/End: Original strand, 3774414 - 3774496
Alignment:
Q  171 tttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||| |||||||||  |||| ||||||||||||| |||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  3774414 tttattatctaacatctaccctcaaactcatgattcatcaacaagaagcattgtgagtttgtcaaacaaaataccaaaaacat 3774496  T

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Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 157 - 251
Target Start/End: Original strand, 15629431 - 15629525
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaac 251  Q
    |||||| ||||||||||| |||||||||   ||| |||||||||  |||  |||||||||| |||||||| ||||||||||||||||| ||||||    
T  15629431 cttaagcccaatattttattatctaacatccaccctcaaactcacaatgagtcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaac 15629525  T

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Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 11993625 - 11993562
Alignment:
Q  186 ttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaa 249  Q
    ||||| ||||||||| |||||||||||||||| |||||||| ||||||||| ||||||| ||||    
T  11993625 ttaccctcaaactcaagatgcatcaacaagaagcattgtgagtttgtcaaataaaatacgaaaa 11993562  T

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Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 200 - 252
Target Start/End: Original strand, 9167904 - 9167956
Alignment:
Q  200 atgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaaca 252  Q
    |||||||||||||||||| |||||||| ||||||||| ||||||| |||||||    
T  9167904 atgatgcatcaacaagaagcattgtgagtttgtcaaataaaatacgaaaaaca 9167956  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 11749687 - 11749780
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| | ||||||||| | |||||||| || | ||||| | |||||||||||| ||||||||   ||| ||||||||||||||||||| ||||||    
T  11749687 cttaagtcaaatattttattttctaacacatatcatcaaatttatgatgcatcaataagaaaca---tgagtttgtcaaacaaaatacaataaacat 11749780  T

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Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 24226065 - 24225986
Alignment:
Q  171 tttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    |||| ||||||||||||||| |||||||||||||||||||||||||| |||||||  ||||||||||||||||| |||||    
T  24226065 tttattatctaacacttaccctcaaactcatgatgcatcaacaagaatcattgtgggtttgtcaaacaaaatacgaaaaa 24225986  T

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Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 176 - 253
Target Start/End: Complemental strand, 54148283 - 54148206
Alignment:
Q  176 tatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||||||| |||  |||||||||||||||||||||||||| |||||||| ||||||||||||||||| ||||||||    
T  54148283 tatctaacacatactctcaaactcatgatgcatcaacaagaagcattgtgagtttgtcaaacaaaatacgaaaaacat 54148206  T

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Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 16871678 - 16871582
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| | |||| |||| |||||||||  |||| |||||||||  |||  ||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  16871678 cttaagcctaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaaacattctgagtttgtcaaacaaaatacgaaaaacat 16871582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 170 - 250
Target Start/End: Complemental strand, 24131825 - 24131745
Alignment:
Q  170 ttttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    ||||| |||||||||  |||| |||||||||  ||| ||||||||||| |||||||| |||||  |||||||||| |||||    
T  24131825 ttttattatctaacatctaccctcaaactcacaatgaatcaacaagaagcattgtgagtttgttcaacaaaatacgaaaaa 24131745  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 1172856 - 1172943
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| |||| |||||||||| |||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||  |||||||    
T  1172856 caatactttattatctaacacataccttcaaattcatgatgcatcaacaa-aaacattgtgagtttgtcaaacaaaatacggaaaacat 1172943  T

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Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 176 - 243
Target Start/End: Original strand, 42631690 - 42631757
Alignment:
Q  176 tatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaata 243  Q
    ||||||||||||| ||| |||||||||||  |||||||||||||||||||| ||||||||||||||||    
T  42631690 tatctaacacttatctttaaactcatgattgatcaacaagaaacattgtgagtttgtcaaacaaaata 42631757  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 29409163 - 29409251
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| |||| |||||||||| |||| |||||||||||||||||||||| ||| || |||||  |||||||||||||||  ||||||||    
T  29409163 caatactttattatctaacacctaccctcaaactcatgatgcatcaacacgaagcactgtgagcttgtcaaacaaaatatgaaaaacat 29409251  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 166 - 249
Target Start/End: Original strand, 38583584 - 38583667
Alignment:
Q  166 aatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaa 249  Q
    ||||||||| |||||||||  ||||||||||||||  |||  |||||||||| ||||||| ||||| ||| |||||||||||||    
T  38583584 aatattttattatctaacatctaccttcaaactcacaatgagtcaacaagaagcattgtggatttgccaatcaaaatacaaaaa 38583667  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 165 - 250
Target Start/End: Complemental strand, 32291174 - 32291089
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    ||||| |||| ||||||||| ||||| ||||||| |  |||  |||||||||| |||||| | ||||||||||||||||| |||||    
T  32291174 caatactttattatctaacatttaccctcaaacttacaatgagtcaacaagaagcattgttagtttgtcaaacaaaatacgaaaaa 32291089  T

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Target: chr7 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 17921283 - 17921379
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| | |||| |||| ||||||| || |||| | ||||||||||||||||||| ||||||| ||||| ||||||||||||||||| ||||||||    
T  17921283 cttaagtctaatactttattatctaatacctacccttaaactcatgatgcatcaaccagaaacaatgtgagtttgtcaaacaaaatacgaaaaacat 17921379  T

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Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 250
Target Start/End: Original strand, 11828004 - 11828083
Alignment:
Q  171 tttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    |||| |||||||||| |||| | |||||||||||||||||||||||| |||||||| ||||| || ||||||||||||||    
T  11828004 tttattatctaacacctaccctaaaactcatgatgcatcaacaagaagcattgtgagtttgtaaatcaaaatacaaaaaa 11828083  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 21814446 - 21814358
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| |||| |||||||| | |||| |||||||||||||||| ||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  21814446 caatactttattatctaacgcctaccctcaaactcatgatgcaacaacaagaagcattgtgagtttgtcaaacagaatatgaaaaacat 21814358  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 166 - 253
Target Start/End: Complemental strand, 48643639 - 48643552
Alignment:
Q  166 aatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||||||  ||||||||  |||| |||||||||  |||  ||||||| ||||||||||| ||||||||| ||||||| ||||||||    
T  48643639 aatattttatcatctaacatctaccctcaaactcacaatgagtcaacaataaacattgtgagtttgtcaaataaaatacgaaaaacat 48643552  T

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Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 164 - 250
Target Start/End: Complemental strand, 44339070 - 44338984
Alignment:
Q  164 ccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    ||||||||||| ||| |||||  |||| |||||||||  |||  ||||| |||| |||||||| ||||||||||||||||| |||||    
T  44339070 ccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcattgtgagtttgtcaaacaaaatacgaaaaa 44338984  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 177 - 248
Target Start/End: Complemental strand, 3902248 - 3902177
Alignment:
Q  177 atctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaa 248  Q
    |||| |||| |||| | |||||||||||| |||||||||||| ||||||| ||||| ||| |||||| ||||    
T  3902248 atcttacacctaccctgaaactcatgatgaatcaacaagaaatattgtgagtttgtaaaaaaaaataaaaaa 3902177  T

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Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 243
Target Start/End: Original strand, 15614334 - 15614419
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaata 243  Q
    |||||| |||||| |||| |||||||||  |||| |||||||||  |||  ||||||||||  ||||||| ||||||||||||||||    
T  15614334 cttaagcccaatactttattatctaacatctaccctcaaactcaaaatgagtcaacaagaat-attgtgagtttgtcaaacaaaata 15614419  T

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Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 3889746 - 3889714
Alignment:
Q  194 aaactcatgatgcatcaacaagaaacattgtga 226  Q
    |||||||||||| ||||||||||||||||||||    
T  3889746 aaactcatgatgaatcaacaagaaacattgtga 3889714  T

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Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 157 - 253
Target Start/End: Original strand, 814471 - 814567
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| |||||| |||| |||||||||  |||| |||||||||  |||  ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  814471 cttaagtccaatactttattatctaacatctaccctcaaactcacaatgagtcaacaagaaacattgtgagtttgtcaaacaaaatacgaaaaacat 814567  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 176 - 264
Target Start/End: Original strand, 2593196 - 2593284
Alignment:
Q  176 tatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacatgataacataaa 264  Q
    |||||||||||  || |||||||||| |||||||| ||||||||||||||| ||||| ||| ||||||| |||||||| |||| |||||    
T  2593196 tatctaacactgcccctcaaactcatcatgcatcagcaagaaacattgtgagtttgttaaagaaaatacgaaaaacataataatataaa 2593284  T

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Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 165 - 253
Target Start/End: Complemental strand, 16462986 - 16462898
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| |||| |||||||| | |||| |||||||||||||||| ||||||||| |||||||| ||||||||||| ||||  ||||||||    
T  16462986 caatactttattatctaacgcctaccctcaaactcatgatgcaacaacaagaagcattgtgagtttgtcaaacagaatatgaaaaacat 16462898  T

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Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 814287 - 814191
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| |||||| |||| |||||||||  |||| ||||||||   |||  ||||||||||||||||||| ||||||||||||||||| || |||||    
T  814287 cttaagtccaatactttattatctaacaactaccctcaaactctcaatgagtcaacaagaaacattgtgactttgtcaaacaaaatacgaagaacat 814191  T

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Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 171 - 243
Target Start/End: Original strand, 22820957 - 22821029
Alignment:
Q  171 tttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaata 243  Q
    |||| ||||||| ||||||  ||||||| ||||||||| |||||||| |||||||| ||||||||||||||||    
T  22820957 tttattatctaaaacttactctcaaactaatgatgcataaacaagaagcattgtgagtttgtcaaacaaaata 22821029  T

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Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Complemental strand, 50297436 - 50297391
Alignment:
Q  208 tcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||    
T  50297436 tcaacaagaaacattgtgagtttgtcaaacaaaatacgaaaaacat 50297391  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 165 - 253
Target Start/End: Original strand, 46691540 - 46691628
Alignment:
Q  165 caatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| |||| |||||||||  |||| ||||||| |  |||  |||||||||| |||||||| ||||| ||||||||||| ||||||||    
T  46691540 caatactttattatctaacatctaccctcaaacttacaatgagtcaacaagaagcattgtgagtttgttaaacaaaatacgaaaaacat 46691628  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 176 - 227
Target Start/End: Complemental strand, 17065562 - 17065511
Alignment:
Q  176 tatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaa 227  Q
    |||||||||| |||| |||||||||||| ||||||| |||||||||| ||||    
T  17065562 tatctaacacctaccctcaaactcatgacgcatcaataagaaacattatgaa 17065511  T

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Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 157 - 253
Target Start/End: Complemental strand, 10741799 - 10741703
Alignment:
Q  157 cttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| ||||||||||| |||||||||  |||| |||||||||  |||  |||||||||| |||||| | ||||||||||||||||| ||||||||    
T  10741799 cttaagcccaatattttattatctaacatctaccctcaaactcacaatgagtcaacaagaagcattgtaagtttgtcaaacaaaatacgaaaaacat 10741703  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 169 - 253
Target Start/End: Original strand, 9365197 - 9365281
Alignment:
Q  169 attttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||||| |||||||||| | |  ||||| ||||||||||||||||||||  ||| ||| |||||||||| ||| |||||||||||    
T  9365197 attttattatctaacacctcctctcaaattcatgatgcatcaacaagaagtattatgagtttgtcaaacgaaaaacaaaaaacat 9365281  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 244
Target Start/End: Original strand, 28063117 - 28063169
Alignment:
Q  192 tcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatac 244  Q
    |||||||||||||||||||  ||||| |||||||| ||||| |||||||||||    
T  28063117 tcaaactcatgatgcatcacaaagaagcattgtgattttgttaaacaaaatac 28063169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 194 - 253
Target Start/End: Complemental strand, 8701792 - 8701734
Alignment:
Q  194 aaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||||||||| ||||| |||||| |||||||| |||||||||||||| ||||| |||||    
T  8701792 aaactcatgatacatca-caagaagcattgtgagtttgtcaaacaaaacacaaacaacat 8701734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 159 - 250
Target Start/End: Complemental strand, 18984522 - 18984431
Alignment:
Q  159 taagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    |||| ||||||||||| ||| |||||  |||| |||||||||  |||  ||||| |||| ||| |||| ||||||||||||||||| |||||    
T  18984522 taagcccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgagaagcatcgtgagtttgtcaaacaaaatacgaaaaa 18984431  T

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Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 158 - 253
Target Start/End: Complemental strand, 9512484 - 9512389
Alignment:
Q  158 ttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| |||||| ||||  ||||||||  |||| ||||||||||||||||||||||||||  ||||||| ||||||| ||||||||  ||||||||    
T  9512484 ttaagtccaatactttatcatctaacatctaccctcaaactcatgatgcatcaacaagaagtattgtgagtttgtcatacaaaatatgaaaaacat 9512389  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 27315265 - 27315186
Alignment:
Q  171 tttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    |||| |||||||||  |||| ||||||||||||||||||||||||||  |||  || ||||||||||||||||| |||||    
T  27315265 tttattatctaacaactaccctcaaactcatgatgcatcaacaagaagtattacgagtttgtcaaacaaaataccaaaaa 27315186  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 250
Target Start/End: Complemental strand, 24137595 - 24137532
Alignment:
Q  187 taccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaa 250  Q
    |||| |||||||||  ||| |||||||||||  ||||||| ||||||||||||||||| |||||    
T  24137595 taccctcaaactcacaatgaatcaacaagaaggattgtgagtttgtcaaacaaaatacgaaaaa 24137532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 187 - 253
Target Start/End: Complemental strand, 40784155 - 40784089
Alignment:
Q  187 taccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    |||| ||||||| ||||||||| |||||||| |||| | | ||||||||||||||||  ||||||||    
T  40784155 taccctcaaacttatgatgcattaacaagaagcattattagtttgtcaaacaaaatatgaaaaacat 40784089  T

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Target: scaffold0007 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 158 - 253
Target Start/End: Original strand, 14338 - 14433
Alignment:
Q  158 ttaagaccaatattttactatctaacacttaccttcaaactcatgatgcatcaacaagaaacattgtgaatttgtcaaacaaaatacaaaaaacat 253  Q
    ||||| ||||||||||| ||| |||||  |||| |||||||||  |||  |||||  ||| |||||| | ||||||||||||||||| ||||||||    
T  14338 ttaagcccaatattttattatttaacatctaccctcaaactcacaatgagtcaacgggaagcattgtaattttgtcaaacaaaatacgaaaaacat 14433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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