View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_79 (Length: 286)
Name: NF1125_low_79
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_79 |
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Alignment Details
Target: chr7 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 65 - 235
Target Start/End: Original strand, 8664429 - 8664599
Alignment:
| Q |
65 |
aaaactgagtacaaagatcaattcaataactggaaataaacaaacattaaactatatttagatagtatggttcataattatttcaaaattcacacacgta |
164 |
Q |
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| T |
8664429 |
aaaacttagtacaaagatcaattcaataactggaaataaacaaacattaaactatatttagatagtatggttcataattatttcaaaattcacacacgta |
8664528 |
T |
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| Q |
165 |
aatcaatctggacagtggcttttagatacttttgaacttatccaaacagtccttgaacacctctttcttat |
235 |
Q |
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| T |
8664529 |
aatcaatctcgacagtggcttttagatacttttgaacttatccaaacagtccttgaacacctctttcttat |
8664599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 65 - 158
Target Start/End: Complemental strand, 8673689 - 8673596
Alignment:
| Q |
65 |
aaaactgagtacaaagatcaattcaataactggaaataaacaaacattaaactatatttagatagtatggttcataattatttcaaaattcaca |
158 |
Q |
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| T |
8673689 |
aaaactgagtgcaaggatcaattcgataactggaaataaactaacattaaactatatttagataatatggttcataattatttcaaatttcaca |
8673596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 8637641 - 8637563
Alignment:
| Q |
87 |
tcaataactggaaataaacaaacattaaactatatttagatagtatggttcataattatttcaaaattcacacacgtaaa |
166 |
Q |
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| T |
8637641 |
tcaataacagaaagtaaactaacattaaactata-ttagataatatgtttcataatttttgcaaatttcacacacataaa |
8637563 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 159
Target Start/End: Complemental strand, 9337874 - 9337833
Alignment:
| Q |
118 |
atatttagatagtatggttcataattatttcaaaattcacac |
159 |
Q |
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| T |
9337874 |
atatttagataatatgattcataattatttcaaatttcacac |
9337833 |
T |
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