View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_83 (Length: 276)
Name: NF1125_low_83
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_83 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 1e-65; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 16 - 150
Target Start/End: Complemental strand, 40859922 - 40859788
Alignment:
| Q |
16 |
atgtactagccaaaagtgacaactgtataagtgctgctcaagaaacgtggtgataaagttattgattataagaatggcattgttactttcttatggggct |
115 |
Q |
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| T |
40859922 |
atgtactagccacaagtgacaactgtataagtgctgctcaagaaacgtggtgataaagttattgattataagaatggcattgttactttcttatggggct |
40859823 |
T |
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| Q |
116 |
gcctagctatattatgttggatctctttattgcgt |
150 |
Q |
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| T |
40859822 |
gcctagctatattctgttggatctctttattgcgt |
40859788 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 183 - 245
Target Start/End: Complemental strand, 40859761 - 40859699
Alignment:
| Q |
183 |
gtatcatccaagtaaaggagatccaagggaaaagacagtgatcagaaaacacatgacatagta |
245 |
Q |
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| T |
40859761 |
gtatcatccaagtaaaggagatccaagggaaaagacagtgatcagaaaacacatgacatagta |
40859699 |
T |
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