View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_84 (Length: 275)
Name: NF1125_low_84
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_84 |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 4 - 260
Target Start/End: Original strand, 34870582 - 34870838
Alignment:
| Q |
4 |
tccatcaaatttcaccaatttcttcaccaaaatcgacatgcaagtataagaggaagtcatgtaaagggatcatgtcatgtgctatgcatccctcacattg |
103 |
Q |
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| T |
34870582 |
tccatcaaatttcaccaatttcttcaccaaactccacatgcaagtataagaggaagtcatgtaaagggatcatgtcatgtgctatgcatccctcacattg |
34870681 |
T |
|
| Q |
104 |
gatacaacattgatgtcgacacacaaacactgataataatttaagaaaatagtaatgattctacacaaccacgtgtgtcaggattctatgctcattaatt |
203 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
34870682 |
gatacgacattgatgtcgacacacaaacactgataataatttgagaaaatagtagtgattctacacaaccacgtgtgtcaggattttatgctcattaatt |
34870781 |
T |
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| Q |
204 |
tttagattggggttattctcgtgatgattgtctatcaaaacttgtaagatgaatgat |
260 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34870782 |
tttggattggggttattctcgtgatgattgtctatcaaaacttgtaagatgaatgat |
34870838 |
T |
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