View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_88 (Length: 260)
Name: NF1125_low_88
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_88 |
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Alignment Details
Target: chr1 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 99 - 251
Target Start/End: Complemental strand, 24273086 - 24272934
Alignment:
| Q |
99 |
tcttagtatgaacattacgccgatctaataatattgaattcaattgatctagatgttctttccaacaaatacgttccagtgaacttgtcgactttcaaag |
198 |
Q |
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| T |
24273086 |
tcttagtatgaacattacatcgatctaataatattgaattcaattgttctagatgttctttccaggaaataccttccagtgaacttgtcgactttcaaac |
24272987 |
T |
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| Q |
199 |
aaatccgaaccagctcttgataccagtttgttattacaagatacgagaataat |
251 |
Q |
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| T |
24272986 |
aaatccgaacttgctcttgataccagtttgttattacaagatacgagaataat |
24272934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 24273395 - 24273292
Alignment:
| Q |
1 |
aaacaatgaatctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatc |
100 |
Q |
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| T |
24273395 |
aaacaatgaatctttaccactaatgaaagactccctaaagttctcatatgacaatcgtaatgaaactaacaaaatcaaggcagcttcctcttcatcaatc |
24273296 |
T |
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| Q |
101 |
ttag |
104 |
Q |
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|||| |
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| T |
24273295 |
ttag |
24273292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 7 - 157
Target Start/End: Original strand, 20289447 - 20289597
Alignment:
| Q |
7 |
tgaatctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagta |
106 |
Q |
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| T |
20289447 |
tgaatttttaccactaatgaaagactccctaaagttctcataggacaatggtaaagaaactaacagaatcaaggcaacatcctcatcatcaatcttaata |
20289546 |
T |
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| Q |
107 |
tgaacattacgccgatctaataatattgaattcaattgatctagatgttct |
157 |
Q |
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| T |
20289547 |
tcaatattatgcagatcaaataatatcgaattcaattgatctagatgttct |
20289597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 18 - 157
Target Start/End: Original strand, 53471851 - 53471990
Alignment:
| Q |
18 |
cactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaacattacg |
117 |
Q |
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||||||||||||||||| |||| |||||||||||||||||||| |||||||||||||||||| | | ||||| |||||||||||| ||| || |||||| |
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| T |
53471851 |
cactaatgaaagactccataaatttctcatatgacaatggtaaagaaactaacagaatcaagacaacatcctcatcatcaatcttaatataaatattacg |
53471950 |
T |
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| Q |
118 |
ccgatctaataatattgaattcaattgatctagatgttct |
157 |
Q |
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| T |
53471951 |
cagatataataatattgaattcaactgatctagatgttct |
53471990 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 20 - 154
Target Start/End: Original strand, 9009739 - 9009874
Alignment:
| Q |
20 |
ctaatgaaagactccctaaagttctcatatgacaatggt-aatgaaactaacagaatcaaggcggcttcctcttcatcaatcttagtatgaacattacgc |
118 |
Q |
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| T |
9009739 |
ctaatgaaagactccctaaagttctcataagacaatagtaaaaaaaactaacataatcaaggtactatcatcgtcatcaattttaatatcaatattacgc |
9009838 |
T |
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| Q |
119 |
cgatctaataatattgaattcaattgatctagatgt |
154 |
Q |
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| T |
9009839 |
agatctaatcatagtgaaatctcttgatctggatgt |
9009874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 30046981 - 30046903
Alignment:
| Q |
1 |
aaacaatgaatctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaag |
79 |
Q |
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| T |
30046981 |
aaacaatgaatatttatcactaatgaaagactccctaaagttctcatatgacaatggtaaagaaactaatagaatcaag |
30046903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 3 - 80
Target Start/End: Original strand, 13419497 - 13419574
Alignment:
| Q |
3 |
acaatgaatctttaccactaatgaaagactccctaaagttctcatatgacaatggtaatgaaactaacagaatcaagg |
80 |
Q |
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| T |
13419497 |
acaatgaatctttaccactaatgaaagactccctaaatttctcatatgacaatggtaaagagactaacaaaatcaagg |
13419574 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 120 - 157
Target Start/End: Complemental strand, 30046874 - 30046837
Alignment:
| Q |
120 |
gatctaataatattgaattcaattgatctagatgttct |
157 |
Q |
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|||||||||||||||||||| ||| ||||||||||||| |
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| T |
30046874 |
gatctaataatattgaattctatttatctagatgttct |
30046837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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