View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_89 (Length: 259)
Name: NF1125_low_89
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_89 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 8e-70; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 8e-70
Query Start/End: Original strand, 7 - 249
Target Start/End: Original strand, 10064655 - 10064898
Alignment:
| Q |
7 |
atatgcacacacatttttagaaattctcaaacagacaaacaccactagctagctatttggggctacacaactactatagttaaatatttgaaatatatat |
106 |
Q |
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| T |
10064655 |
atatgcacacacatttttagaaattctcaaacagacaaacaccgctagctagttatttgggcctacacaactactatagttaaatatttgaaatatatat |
10064754 |
T |
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| Q |
107 |
gcacacttcttgagtttggttt-tnnnnnnnnnnnnncttgaaaagaaaactacttctacaacacacnnnnnnnnnnnnnccagagataaaatctggttc |
205 |
Q |
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| T |
10064755 |
gcacacttcttgagtttggtttaaaaaaaaaaaaaaacttgaaaagaaaactacttctacaacacactttttagttttttccagtgatgaaatctggttc |
10064854 |
T |
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| Q |
206 |
agctggtttcctaggcaaaagtggtagaaatttctttgtctgtg |
249 |
Q |
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| T |
10064855 |
agctggtttcctaggcaaaagtggtagaaatttctttgtctgtg |
10064898 |
T |
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