View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_92 (Length: 251)
Name: NF1125_low_92
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_92 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 79 - 240
Target Start/End: Original strand, 40962844 - 40963005
Alignment:
| Q |
79 |
acattgtgatttttatgatatctacatcatttaactctttctacacagaaaaccttgtgaatataaagaggaaatatcaatatgtcacatcataatccta |
178 |
Q |
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| T |
40962844 |
acattgtgatttttatgatatctacatcatttaactctttctacacagaaaaccttgtgaatataaagaggaaatatcaatatgtcacatcataatccta |
40962943 |
T |
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| Q |
179 |
tcaaagacacttataatttaaggataatgattttatggattacatcatctattttcacctat |
240 |
Q |
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| T |
40962944 |
tcaaagacacttataatttaaggataatgattttatggattacatcatctattttcacctat |
40963005 |
T |
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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40962795 - 40962833
Alignment:
| Q |
1 |
aaactcaaatattaacttcaaataagtaactcagtaatt |
39 |
Q |
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| T |
40962795 |
aaactcaaatattaacttcaaataagtaactcagtaatt |
40962833 |
T |
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