View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_93 (Length: 251)
Name: NF1125_low_93
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_93 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 5313458 - 5313232
Alignment:
| Q |
1 |
agctataatgtgcattattacatcaacgtatcagaattgtcgga----tacgatgcttgatgagaatttgtttttattattattgtttaaatccaatctg |
96 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313458 |
agctataatgtgcattattacatcaacgattcagaattgtcggacggatacgatgcttgatgagaatttgtttttattattattgtttaaatccaatctg |
5313359 |
T |
|
| Q |
97 |
gtctccctgttttgcctaatacaaataatagttttgaagacatggaaaaacttaccctacttttattttatcattgaagaaaaacaaagttctgttaatt |
196 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5313358 |
gtctccctgttttgcctaatacaaataatagttttgaagacatggaaaaacttaccctacttttattttatcattgaagaaaaacaaagttctgttaatt |
5313259 |
T |
|
| Q |
197 |
tgttcaagcatcaaaagagacaaattt |
223 |
Q |
| |
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|||||||||||||||||||| |||||| |
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| T |
5313258 |
tgttcaagcatcaaaagagagaaattt |
5313232 |
T |
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