View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_94 (Length: 248)
Name: NF1125_low_94
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_94 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 34 - 248
Target Start/End: Original strand, 41606342 - 41606558
Alignment:
| Q |
34 |
gtgaaataaaaagcttggtaaaccagtaattaattaagag--ttaagacactaacatatacctagaaatttcattccacaagggtgctttctgattattc |
131 |
Q |
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| T |
41606342 |
gtgaaataaaaagcttggtaaaccagtaattaattaagagagttaagacactaacatatacctagaaatttcattccacaagggtgctttctgattattc |
41606441 |
T |
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| Q |
132 |
tctctgaacttagaatcaagacgagatctgatttctagaagagaaagagtctcttgtctaggccatctgttgttacaagaatcaaagttaccaagccatc |
231 |
Q |
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| T |
41606442 |
tctctgaacttagaatcaagacgagatctgatttctagaagagaaagagtctcttgtctgggccatctgttgttacaagaatcaaagttaccaagccatc |
41606541 |
T |
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| Q |
232 |
ctttatcagaagtttct |
248 |
Q |
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| T |
41606542 |
ctttatcagaagtttct |
41606558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 147 - 199
Target Start/End: Complemental strand, 26598053 - 26598001
Alignment:
| Q |
147 |
tcaagacgagatctgatttctagaagagaaagagtctcttgtctaggccatct |
199 |
Q |
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| T |
26598053 |
tcaagacgagatctgatttcaagaagagtaagagtttcttgtcttggccatct |
26598001 |
T |
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