View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_95 (Length: 247)
Name: NF1125_low_95
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_95 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4150423 - 4150200
Alignment:
| Q |
1 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaagggatatttttcgatatatgac |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4150423 |
aagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaagggatatttttcgatatatgac |
4150324 |
T |
|
| Q |
101 |
gggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacgga |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
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| T |
4150323 |
gggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaataggattacccttaaaatcaaagctacgga |
4150224 |
T |
|
| Q |
201 |
gacttggagtagataactcaattt |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
4150223 |
gacttggagtagataactcgattt |
4150200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 4166192 - 4165969
Alignment:
| Q |
1 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaagggatatttttcgatatatgac |
100 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4166192 |
aagtacctcaagaatagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaagggatatttttcgatatatgac |
4166093 |
T |
|
| Q |
101 |
gggactgctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacgga |
200 |
Q |
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| T |
4166092 |
gggactgctacatcaatttttacatgtttgatagaagagagattgttattgttcccactgagtttctgaataggattacccttaaaatcaaagctacgga |
4165993 |
T |
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| Q |
201 |
gacttggagtagataactcaattt |
224 |
Q |
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||||||||||||||||||| |||| |
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| T |
4165992 |
gacttggagtagataactcgattt |
4165969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 13485324 - 13485418
Alignment:
| Q |
121 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
215 |
Q |
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||||||||| ||||||||||||||| | ||| ||||| ||||||||||| |||| |||| |||||||||||| | | ||||||||||||||||| |
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| T |
13485324 |
tacatgtttgatagaagagagattgctcttgatcccatggagtttctgaataggaataccatgaaaatcaaaggtgcagagacttggagtagata |
13485418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 78
Target Start/End: Original strand, 13490165 - 13490242
Alignment:
| Q |
1 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttgaaaagaaccaa |
78 |
Q |
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|||||||| |||||||| |||||| || ||||||||||| ||| || |||||||||||||||||||| |||||||| |
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| T |
13490165 |
aagtacctgaagagtagttgaagacacagtcaatgattcaatattagcaagctcaactagccagttgagcagaaccaa |
13490242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 68
Target Start/End: Original strand, 777419 - 777486
Alignment:
| Q |
1 |
aagtacctcaagagtagatgaagagactgtcaatgattcgatacgagaaagctcaactagccagttga |
68 |
Q |
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|||||||||||||||| |||||| ||||||| |||||||||| || ||||||||||||||| |||| |
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| T |
777419 |
aagtacctcaagagtatttgaagacactgtcagtgattcgatattagcaagctcaactagccaattga |
777486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 121 - 215
Target Start/End: Original strand, 13490285 - 13490379
Alignment:
| Q |
121 |
tacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagata |
215 |
Q |
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||||||||| |||||||||||||| | ||| ||| | ||||||||||| |||| |||| ||||| |||||| ||| |||||||||||||||| |
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| T |
13490285 |
tacatgtttaatagaagagagatttctcttgctccgatggagtttctgaataggaataccatgaaactcaaaggtacaaagacttggagtagata |
13490379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 108 - 209
Target Start/End: Complemental strand, 32414368 - 32414267
Alignment:
| Q |
108 |
ctacatcaatttttacatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttgg |
207 |
Q |
| |
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|||| |||||||| |||||||| ||||||||||||||| | ||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||| |
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| T |
32414368 |
ctacgtcaattttcacatgtttgatagaagagagattgctcttgctcccgtagagtttctgaacaggaatacccctaaaatcaaagctacaaagacttgg |
32414269 |
T |
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| Q |
208 |
ag |
209 |
Q |
| |
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|| |
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| T |
32414268 |
ag |
32414267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 122 - 221
Target Start/End: Original strand, 14288277 - 14288376
Alignment:
| Q |
122 |
acatgttttatagaagagagattgttattgttcccactgagtttctgaacaggattaccctgaaaatcaaagctacggagacttggagtagataactcaa |
221 |
Q |
| |
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|||||||| ||||||||||||||| | || |||||| |||||| |||| |||| ||||| ||||| |||| ||| |||||||||||| |||| ||||| |
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| T |
14288277 |
acatgtttgatagaagagagattgattttactcccacggagtttttgaagaggagtacccctaaaataaaagttacagagacttggagtggatagctcaa |
14288376 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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