View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1125_low_97 (Length: 242)
Name: NF1125_low_97
Description: NF1125
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1125_low_97 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 164; Significance: 9e-88; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 4150052 - 4150282
Alignment:
| Q |
9 |
gatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcatatcaagtgaca |
108 |
Q |
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| T |
4150052 |
gatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttcaagaacaaaacctgttcatatcaagtgaca |
4150151 |
T |
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| Q |
109 |
cacttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatctactccaagtctccgtagctttgattttcagggtaa |
208 |
Q |
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| T |
4150152 |
cacttgtttatttaag---aatcaatacatttgttactcaccaatgttggaaaatcgagttatctactccaagtctccgtagctttgattttaagggtaa |
4150248 |
T |
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| Q |
209 |
tcctgttcagaaactcagtgggaacaataacaat |
242 |
Q |
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| T |
4150249 |
tcctattcagaaactcagtgggaacaataacaat |
4150282 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 9 - 242
Target Start/End: Original strand, 4165824 - 4166051
Alignment:
| Q |
9 |
gatgataaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcatatcaagtgaca |
108 |
Q |
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| T |
4165824 |
gatgatgaccgtgctgagcccttttcgtcatttaacagcttgaaaagtttgatcattcactgttgtgttgaagaacaaaacctgttcatatcaagtgaca |
4165923 |
T |
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| Q |
109 |
cacttgtttagttaagattaatctatacatttactacttatcgatgctgcaaaattgagttatctactccaagtctccgtagctttgattttcagggtaa |
208 |
Q |
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| T |
4165924 |
cacttgtttatttaag---aatcaatacatttgcta---ttcaacgttgcaaaatcgagttatctactccaagtctccgtagctttgattttaagggtaa |
4166017 |
T |
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| Q |
209 |
tcctgttcagaaactcagtgggaacaataacaat |
242 |
Q |
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| T |
4166018 |
tcctattcagaaactcagtgggaacaataacaat |
4166051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 224
Target Start/End: Complemental strand, 13485418 - 13485363
Alignment:
| Q |
169 |
tatctactccaagtctccgtagctttgattttcagggtaatcctgttcagaaactc |
224 |
Q |
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| T |
13485418 |
tatctactccaagtctctgcacctttgattttcatggtattcctattcagaaactc |
13485363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 158 - 194
Target Start/End: Original strand, 25597540 - 25597576
Alignment:
| Q |
158 |
caaaattgagttatctactccaagtctccgtagcttt |
194 |
Q |
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| T |
25597540 |
caaaattgagttatctactccaagtctacgtaacttt |
25597576 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 224
Target Start/End: Original strand, 32414267 - 32414316
Alignment:
| Q |
175 |
ctccaagtctccgtagctttgattttcagggtaatcctgttcagaaactc |
224 |
Q |
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| T |
32414267 |
ctccaagtctttgtagctttgattttaggggtattcctgttcagaaactc |
32414316 |
T |
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