View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11260_high_11 (Length: 388)
Name: NF11260_high_11
Description: NF11260
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11260_high_11 |
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| [»] scaffold0432 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 134; Significance: 1e-69; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 159 - 380
Target Start/End: Original strand, 9828999 - 9829217
Alignment:
| Q |
159 |
acaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttacaaatcggtttnnnnnnnnnnnnnnnnntttcatactcactaa |
258 |
Q |
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| T |
9828999 |
acaacatttactaactcatcagcacttctttcctgaacacgattccttataagtttactaatcggtttatcatcatcatcat---tttcatactcactaa |
9829095 |
T |
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| Q |
259 |
taaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttgatcataattggagta |
358 |
Q |
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||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
9829096 |
taaagacattacgagtccgtttccttttcggaattacagcacataagagatcttcaacaaaatcagaatcttcctcgttgctttgatcataattggagta |
9829195 |
T |
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| Q |
359 |
caaattctttcccttctctgct |
380 |
Q |
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||||||||||||||| |||||| |
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| T |
9829196 |
caaattctttcccttttctgct |
9829217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9755357 - 9755475
Alignment:
| Q |
1 |
catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttcctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9755357 |
catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttcctt |
9755456 |
T |
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| Q |
101 |
cctccttacaagttgacta |
119 |
Q |
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| T |
9755457 |
cctccttacaagttgacta |
9755475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 9828832 - 9828950
Alignment:
| Q |
1 |
catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttcctt |
100 |
Q |
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| T |
9828832 |
catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattttcttagaggccttcgacggcggcgcctactctcttcctt |
9828931 |
T |
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| Q |
101 |
cctccttacaagttgacta |
119 |
Q |
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| T |
9828932 |
cctccttacaagttgacta |
9828950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 244 - 373
Target Start/End: Original strand, 9755629 - 9755758
Alignment:
| Q |
244 |
tttcatactcactaataaagacattatgagtccgtttccttttcggtattacagcacataagagatcttcaacaaaatcagaatcttccttattgctttg |
343 |
Q |
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||||| ||||||| |||||||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
9755629 |
tttcagactcacttataaagacattacgagtccgtttcctttttggaattacagcacataagagatcttcaacaaaatcagaatcttcctcactgctttg |
9755728 |
T |
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| Q |
344 |
atcataattggagtacaaattctttccctt |
373 |
Q |
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| T |
9755729 |
atcataattggagtacaaattctttccctt |
9755758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9804005 - 9804065
Alignment:
| Q |
1 |
catttgttggaatactttgctgatagttgaccttatcatcatgacttttggttacacattt |
61 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||| |
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| T |
9804005 |
catttgttggaatactttgctgatagttgaccttatcaccatgaattttgcttacacattt |
9804065 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 159 - 216
Target Start/End: Original strand, 9755535 - 9755592
Alignment:
| Q |
159 |
acaacatttactaactcgtcagcacttctttcctgaacacgattccatataagtttac |
216 |
Q |
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| T |
9755535 |
acaacatttaccaactcgtcagcacttctttcctgaacatgattccttacaagtttac |
9755592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 317 - 380
Target Start/End: Original strand, 9813864 - 9813927
Alignment:
| Q |
317 |
aaaatcagaatcttccttattgctttgatcataattggagtacaaattctttcccttctctgct |
380 |
Q |
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||||||||| | ||| | |||| ||||||| ||||||||||| |||||||||||||| |||||| |
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| T |
9813864 |
aaaatcagatttttcgtcattgatttgatcctaattggagtaaaaattctttcccttttctgct |
9813927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0432 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0432
Description:
Target: scaffold0432; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 7335 - 7368
Alignment:
| Q |
1 |
catttgttggaatactttgctgatagttgacctt |
34 |
Q |
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||||||||||||||||||| |||||||||||||| |
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| T |
7335 |
catttgttggaatactttgatgatagttgacctt |
7368 |
T |
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